BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN28g01.yg.2.1
(513 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513992.1|CO513992 s13dSG72A1000069_156646 Glandular tr... 32 0.36
gb|CO514172.1|CO514172 s13dSG70B1000077_157006 Glandular tr... 32 0.36
gb|CO516881.1|CO516881 s13dSG58A0600038_468308 Glandular tr... 32 0.36
>gb|CO513992.1|CO513992 s13dSG72A1000069_156646 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 369
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaa 229
||||||||||||||||
Sbjct: 142 caccctttcaagaaaa 157
>gb|CO514172.1|CO514172 s13dSG70B1000077_157006 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 217 cctttcaagaaaattt 232
||||||||||||||||
Sbjct: 145 cctttcaagaaaattt 160
>gb|CO516881.1|CO516881 s13dSG58A0600038_468308 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 508
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 tcagtgctgatactaa 89
||||||||||||||||
Sbjct: 201 tcagtgctgatactaa 216
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1478
Number of Sequences: 7669
Number of extensions: 1478
Number of successful extensions: 365
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 4
length of query: 513
length of database: 3,745,706
effective HSP length: 16
effective length of query: 497
effective length of database: 3,623,002
effective search space: 1800631994
effective search space used: 1800631994
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)