BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK13d03.yg.3.1
(2611 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698368.1|AW698368 G214 glandular-haired subtracted cDN... 36 0.12
gb|CO513086.1|CO513086 s13dSG89F0500043_122098 Glandular tr... 34 0.48
gb|CO514579.1|CO514579 s13dSG42D0900078_327818 Glandular tr... 34 0.48
gb|AF196288.1|AF196288 Medicago sativa subsp. x varia Ser/T... 34 0.48
>gb|AW698368.1|AW698368 G214 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 411
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 904 tagagatccaagatgggg 921
||||||||||||||||||
Sbjct: 294 tagagatccaagatgggg 277
>gb|CO513086.1|CO513086 s13dSG89F0500043_122098 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2020 gccgctggtggtggagc 2036
|||||||||||||||||
Sbjct: 287 gccgctggtggtggagc 303
>gb|CO514579.1|CO514579 s13dSG42D0900078_327818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 555
Score = 34.2 bits (17), Expect = 0.48
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 400 caaggccaccacccttgttct 420
|||||||||||||||| ||||
Sbjct: 401 caaggccaccacccttcttct 381
>gb|AF196288.1|AF196288 Medicago sativa subsp. x varia Ser/Thr specific protein phosphatase
2A B regulatory subunit alpha isoform mRNA, complete cds
Length = 2396
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 855 ttagagctactggaatt 871
|||||||||||||||||
Sbjct: 833 ttagagctactggaatt 817
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3532
Number of Sequences: 7669
Number of extensions: 3532
Number of successful extensions: 879
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 6
length of query: 2611
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2594
effective length of database: 3,615,333
effective search space: 9378173802
effective search space used: 9378173802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)