BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH2g03.yg.2.1
         (537 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|X96847.1|MSRBCSK1A  M.sativa Rbcsk-1A gene                     36   0.024
gb|CO516192.1|CO516192  s13dSG67E0500039_445712 Glandular tr...    32   0.38 

>emb|X96847.1|MSRBCSK1A M.sativa Rbcsk-1A gene
          Length = 3180

 Score = 36.2 bits (18), Expect = 0.024
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 75   gcaatggaagtaatgtct 92
            ||||||||||||||||||
Sbjct: 1951 gcaatggaagtaatgtct 1934



>gb|CO516192.1|CO516192 s13dSG67E0500039_445712 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 459

 Score = 32.2 bits (16), Expect = 0.38
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 274 ccagcaaagatagaat 289
           ||||||||||||||||
Sbjct: 154 ccagcaaagatagaat 139



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1280
Number of Sequences: 7669
Number of extensions: 1280
Number of successful extensions: 368
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 4
length of query: 537
length of database: 3,745,706
effective HSP length: 16
effective length of query: 521
effective length of database: 3,623,002
effective search space: 1887584042
effective search space used: 1887584042
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)