BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCG13d12.yg.2.1
         (755 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW698351.1|AW698351  g32 glandular-haired subtracted cDNA...    42   6e-004
gb|AW698352.1|AW698352  g34 glandular-haired subtracted cDNA...    42   6e-004
gb|AW698341.1|AW698341  G143 glandular-haired subtracted cDN...    40   0.002
gb|AW698345.1|AW698345  G73 glandular-haired subtracted cDNA...    40   0.002
gb|AW698347.1|AW698347  G78 glandular-haired subtracted cDNA...    40   0.002
gb|AW698350.1|AW698350  g29 glandular-haired subtracted cDNA...    40   0.002
gb|AW698672.1|AW698672  R103 non-glandular-haired subtracted...    40   0.002
gb|AW698675.1|AW698675  R10 non-glandular-haired subtracted ...    40   0.002
gb|AW698681.1|AW698681  R11 non-glandular-haired subtracted ...    40   0.002
gb|AW698683.1|AW698683  R121 non-glandular-haired subtracted...    40   0.002
gb|AW698685.1|AW698685  R125 non-glandular-haired subtracted...    40   0.002
gb|AW698688.1|AW698688  R12 non-glandular-haired subtracted ...    40   0.002
gb|AW698697.1|AW698697  R145 non-glandular-haired subtracted...    40   0.002
gb|AW698698.1|AW698698  R146 non-glandular-haired subtracted...    40   0.002
gb|AW698715.1|AW698715  R93 non-glandular-haired subtracted ...    40   0.002
gb|AW698716.1|AW698716  R95 non-glandular-haired subtracted ...    40   0.002
gb|AW698886.1|AW698886  r151 non-glandular-haired subtracted...    40   0.002
gb|AW698901.1|AW698901  r97 non-glandular-haired subtracted ...    40   0.002
gb|AW698338.1|AW698338  G1 glandular-haired subtracted cDNA ...    36   0.035
gb|AW698678.1|AW698678  R113 non-glandular-haired subtracted...    36   0.035
gb|AW698679.1|AW698679  R115 non-glandular-haired subtracted...    36   0.035
gb|AW698699.1|AW698699  R149 non-glandular-haired subtracted...    36   0.035
gb|AW698711.1|AW698711  R89 non-glandular-haired subtracted ...    36   0.035
gb|AW698717.1|AW698717  R96 non-glandular-haired subtracted ...    36   0.035
gb|AW698718.1|AW698718  R98 non-glandular-haired subtracted ...    36   0.035
gb|AW698895.1|AW698895  r3 non-glandular-haired subtracted c...    36   0.035
gb|AJ888497.1|AJ888497  AJ888497 Medicago sativa subsp. x va...    36   0.035
gb|AW698354.1|AW698354  g40 glandular-haired subtracted cDNA...    34   0.14 
gb|AW698355.1|AW698355  g43 glandular-haired subtracted cDNA...    34   0.14 
gb|AW698680.1|AW698680  R116 non-glandular-haired subtracted...    34   0.14 
gb|AW698777.1|AW698777  r361 non-glandular-haired subtracted...    34   0.14 
gb|DQ122784.1|  Medicago sativa clone C43 putative splicing ...    34   0.14 
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 327

 Score = 42.1 bits (21), Expect = 6e-004
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||||||||||||
Sbjct: 310 gcggccgcccgggcaggtact 290
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 365

 Score = 42.1 bits (21), Expect = 6e-004
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  gcggccgcccgggcaggtact 21
          |||||||||||||||||||||
Sbjct: 4  gcggccgcccgggcaggtact 24
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 264

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtac 241
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 407

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 553

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 93  gcggccgcccgggcaggtac 112
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 274

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 270 gcggccgcccgggcaggtac 251
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 251

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 289

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 168

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 393

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 389 gcggccgcccgggcaggtac 370
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 356

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 4  gcggccgcccgggcaggtac 23
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 354

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 326

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 4  gcggccgcccgggcaggtac 23
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 440

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 434

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 4  gcggccgcccgggcaggtac 23
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 129

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggtac 24
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 212

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 208 gcggccgcccgggcaggtac 189
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
          mRNA sequence
          Length = 483

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  gcggccgcccgggcaggt 18
          ||||||||||||||||||
Sbjct: 4  gcggccgcccgggcaggt 21
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 252

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   gcggccgcccgggcaggt 18
           ||||||||||||||||||
Sbjct: 248 gcggccgcccgggcaggt 231
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 418

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  gcggccgcccgggcaggt 18
          ||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggt 22
>gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 275

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  gcggccgcccgggcaggt 18
          ||||||||||||||||||
Sbjct: 5  gcggccgcccgggcaggt 22
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 343

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   gcggccgcccgggcaggt 18
           ||||||||||||||||||
Sbjct: 339 gcggccgcccgggcaggt 322
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 384

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   gcggccgcccgggcaggt 18
           ||||||||||||||||||
Sbjct: 380 gcggccgcccgggcaggt 363
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 330

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   gcggccgcccgggcaggt 18
           ||||||||||||||||||
Sbjct: 326 gcggccgcccgggcaggt 309
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 370

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   gcggccgcccgggcaggt 18
           ||||||||||||||||||
Sbjct: 366 gcggccgcccgggcaggt 349
>gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x varia 4-day-old Medicago sativa
           subsp. x varia cDNA, mRNA sequence
          Length = 561

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   gcggccgcccgggcaggt 18
           ||||||||||||||||||
Sbjct: 555 gcggccgcccgggcaggt 538
>gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 307

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           ||||| |||||||||||||||
Sbjct: 280 gcggcagcccgggcaggtact 260
>gb|AW698355.1|AW698355 g43 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 168

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 5   ccgcccgggcaggtact 21
           |||||||||||||||||
Sbjct: 168 ccgcccgggcaggtact 152
>gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 290

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 5   ccgcccgggcaggtact 21
           |||||||||||||||||
Sbjct: 283 ccgcccgggcaggtact 267
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 340

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 1   gcggccgcccgggcagg 17
           |||||||||||||||||
Sbjct: 328 gcggccgcccgggcagg 312
>gb|DQ122784.1| Medicago sativa clone C43 putative splicing factor Prp8 mRNA,
           partial cds
          Length = 552

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||| ||||||||
Sbjct: 498 gcggccgcccggccaggtact 478
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1660
Number of Sequences: 7669
Number of extensions: 1660
Number of successful extensions: 487
Number of sequences better than  0.5: 33
Number of HSP's better than  0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 35
length of query: 755
length of database: 3,745,706
effective HSP length: 16
effective length of query: 739
effective length of database: 3,623,002
effective search space: 2677398478
effective search space used: 2677398478
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)