BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF7a10.yg.2.1
(523 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516304.1|CO516304 s13dSG69G1100086_445936 Glandular tr... 44 1e-004
>gb|CO516304.1|CO516304 s13dSG69G1100086_445936 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 44.1 bits (22), Expect = 1e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tatcgagttaccattgtggataatct 238
|||||||||||||| |||||||||||
Sbjct: 491 tatcgagttaccatagtggataatct 516
Score = 40.1 bits (20), Expect = 0.002
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||| |||||||||||| || ||||| || ||||| ||||| || || || |||||
Sbjct: 394 gttttctgtccatgaacctggggtcacccatgttttagtgacaggcggtgcaggctatat 453
Query: 176 tggttcacatgc 187
|| ||||||||
Sbjct: 454 cggctcacatgc 465
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1030
Number of Sequences: 7669
Number of extensions: 1030
Number of successful extensions: 349
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 2
length of query: 523
length of database: 3,745,706
effective HSP length: 16
effective length of query: 507
effective length of database: 3,623,002
effective search space: 1836862014
effective search space used: 1836862014
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)