BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 40 0.002
gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted... 40 0.002
gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted ... 40 0.002
gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDN... 38 0.008
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 38 0.008
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 38 0.008
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 38 0.008
gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted... 38 0.008
gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x va... 38 0.008
gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA ... 36 0.032
gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA... 36 0.032
gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted... 36 0.032
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 36 0.032
gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted... 36 0.032
gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted... 36 0.032
gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted c... 36 0.032
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 36 0.032
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 36 0.032
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 36 0.032
gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted c... 36 0.032
gb|AJ888491.1|AJ888491 AJ888491 Medicago sativa subsp. x va... 36 0.032
gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x va... 36 0.032
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 34 0.13
gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted... 34 0.13
gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted ... 34 0.13
gb|CO513882.1|CO513882 s13dSG73F1000079_156426 Glandular tr... 34 0.13
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 32 0.50
gb|AW698348.1|AW698348 G79 glandular-haired subtracted cDNA... 32 0.50
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 32 0.50
gb|AW698353.1|AW698353 g38 glandular-haired subtracted cDNA... 32 0.50
gb|AW698396.1|AW698396 G243 glandular-haired subtracted cDN... 32 0.50
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 32 0.50
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 32 0.50
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 32 0.50
gb|AW698707.1|AW698707 R1 non-glandular-haired subtracted c... 32 0.50
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 32 0.50
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtaca 24
|||||||||||||| |||||||||
Sbjct: 475 tagcgtggtcgcggccgaggtaca 452
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 181
Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggtacag 25
||||||||||||| ||||||||||
Sbjct: 181 agcgtggtcgcggccgaggtacag 158
>gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 69
Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tagcgtggtcgcggtcgaggtaca 24
|||||||||||||| |||||||||
Sbjct: 1 tagcgtggtcgcggccgaggtaca 24
>gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 390
Score = 38.2 bits (19), Expect = 0.008
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtaca 24
||||||||||||| |||||||||
Sbjct: 2 agcgtggtcgcggccgaggtaca 24
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 327
Score = 38.2 bits (19), Expect = 0.008
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 1 tagcgtggtcgcggccgaggtac 23
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 38.2 bits (19), Expect = 0.008
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 365 tagcgtggtcgcggccgaggtac 343
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 38.2 bits (19), Expect = 0.008
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggtacagaag 28
||||||||||||| |||||||| ||||
Sbjct: 440 agcgtggtcgcggccgaggtacggaag 414
>gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 227
Score = 38.2 bits (19), Expect = 0.008
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 3 gcgtggtcgcggtcgaggtacag 25
|||||||||||| ||||||||||
Sbjct: 227 gcgtggtcgcggccgaggtacag 205
>gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 795
Score = 38.2 bits (19), Expect = 0.008
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 46 tagcgtggtcgcggccgaggtac 68
>gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 182
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 182 agcgtggtcgcggccgaggtac 161
>gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 225
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3 gcgtggtcgcggtcgaggtaca 24
|||||||||||| |||||||||
Sbjct: 1 gcgtggtcgcggccgaggtaca 22
>gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 156
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 477
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 366
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 248
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 178 agcgtggtcgcggccgaggtac 157
>gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 421
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 1 agcgtggtcgcggccgaggtac 22
>gb|AJ888491.1|AJ888491 AJ888491 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 787
Score = 36.2 bits (18), Expect = 0.032
Identities = 28/32 (87%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtacagaagtaga 32
|||||||||||||| |||| ||| |||||||
Sbjct: 533 tagcgtggtcgcggcngaggnacaaaagtaga 502
>gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 470
Score = 36.2 bits (18), Expect = 0.032
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggtac 23
||||||||||||| ||||||||
Sbjct: 470 agcgtggtcgcggccgaggtac 449
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggta 22
||||||||||||| |||||||
Sbjct: 356 agcgtggtcgcggccgaggta 336
>gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 380
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggta 22
||||||||||||| |||||||
Sbjct: 1 agcgtggtcgcggccgaggta 21
>gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 351
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggta 22
||||||||||||| |||||||
Sbjct: 1 agcgtggtcgcggccgaggta 21
>gb|CO513882.1|CO513882 s13dSG73F1000079_156426 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 610
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 63 tcctgaaaaagtcaaaa 79
|||||||||||||||||
Sbjct: 408 tcctgaaaaagtcaaaa 424
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 264
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 2 agcgtggtcgcggccgaggt 21
>gb|AW698348.1|AW698348 G79 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 652
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 1 agcgtggtcgcggccgaggt 20
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 274
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 3 gcgtggtcgcggtcgaggta 22
|||||||||||| |||||||
Sbjct: 1 gcgtggtcgcggccgaggta 20
>gb|AW698353.1|AW698353 g38 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 386
Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 tagcgtggtcgcggtc 16
||||||||||||||||
Sbjct: 59 tagcgtggtcgcggtc 74
>gb|AW698396.1|AW698396 G243 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgagg 20
|||||||||||||| |||||
Sbjct: 309 tagcgtggtcgcggccgagg 290
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 251 agcgtggtcgcggccgaggt 232
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 289 agcgtggtcgcggccgaggt 270
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 354 agcgtggtcgcggccgaggt 335
>gb|AW698707.1|AW698707 R1 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 519
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 2 agcgtggtcgcggccgaggt 21
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 32.2 bits (16), Expect = 0.50
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2 agcgtggtcgcggtcgaggt 21
||||||||||||| ||||||
Sbjct: 1 agcgtggtcgcggccgaggt 20
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1165
Number of Sequences: 7669
Number of extensions: 1165
Number of successful extensions: 371
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 36
length of query: 697
length of database: 3,745,706
effective HSP length: 16
effective length of query: 681
effective length of database: 3,623,002
effective search space: 2467264362
effective search space used: 2467264362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)