BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCF4h05.yg.2.1
         (697 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW698338.1|AW698338  G1 glandular-haired subtracted cDNA ...    40   0.002
gb|AW698682.1|AW698682  R120 non-glandular-haired subtracted...    40   0.002
gb|AW698714.1|AW698714  R91 non-glandular-haired subtracted ...    40   0.002
gb|AW698339.1|AW698339  g122 glandular-haired subtracted cDN...    38   0.008
gb|AW698351.1|AW698351  g32 glandular-haired subtracted cDNA...    38   0.008
gb|AW698352.1|AW698352  g34 glandular-haired subtracted cDNA...    38   0.008
gb|AW698715.1|AW698715  R93 non-glandular-haired subtracted ...    38   0.008
gb|AW698893.1|AW698893  r166 non-glandular-haired subtracted...    38   0.008
gb|AJ888503.1|AJ888503  AJ888503 Medicago sativa subsp. x va...    38   0.008
gb|AW698342.1|AW698342  G2 glandular-haired subtracted cDNA ...    36   0.032
gb|AW698346.1|AW698346  G75 glandular-haired subtracted cDNA...    36   0.032
gb|AW698684.1|AW698684  R123 non-glandular-haired subtracted...    36   0.032
gb|AW698685.1|AW698685  R125 non-glandular-haired subtracted...    36   0.032
gb|AW698687.1|AW698687  R128 non-glandular-haired subtracted...    36   0.032
gb|AW698701.1|AW698701  R154 non-glandular-haired subtracted...    36   0.032
gb|AW698712.1|AW698712  R8 non-glandular-haired subtracted c...    36   0.032
gb|AW698717.1|AW698717  R96 non-glandular-haired subtracted ...    36   0.032
gb|AW698718.1|AW698718  R98 non-glandular-haired subtracted ...    36   0.032
gb|AW698884.1|AW698884  r147 non-glandular-haired subtracted...    36   0.032
gb|AW698899.1|AW698899  r7 non-glandular-haired subtracted c...    36   0.032
gb|AJ888491.1|AJ888491  AJ888491 Medicago sativa subsp. x va...    36   0.032
gb|AJ888496.1|AJ888496  AJ888496 Medicago sativa subsp. x va...    36   0.032
gb|AW698688.1|AW698688  R12 non-glandular-haired subtracted ...    34   0.13 
gb|AW698693.1|AW698693  R140 non-glandular-haired subtracted...    34   0.13 
gb|AW698709.1|AW698709  R84 non-glandular-haired subtracted ...    34   0.13 
gb|CO513882.1|CO513882  s13dSG73F1000079_156426 Glandular tr...    34   0.13 
gb|AW698341.1|AW698341  G143 glandular-haired subtracted cDN...    32   0.50 
gb|AW698348.1|AW698348  G79 glandular-haired subtracted cDNA...    32   0.50 
gb|AW698350.1|AW698350  g29 glandular-haired subtracted cDNA...    32   0.50 
gb|AW698353.1|AW698353  g38 glandular-haired subtracted cDNA...    32   0.50 
gb|AW698396.1|AW698396  G243 glandular-haired subtracted cDN...    32   0.50 
gb|AW698672.1|AW698672  R103 non-glandular-haired subtracted...    32   0.50 
gb|AW698675.1|AW698675  R10 non-glandular-haired subtracted ...    32   0.50 
gb|AW698697.1|AW698697  R145 non-glandular-haired subtracted...    32   0.50 
gb|AW698707.1|AW698707  R1 non-glandular-haired subtracted c...    32   0.50 
gb|AW698901.1|AW698901  r97 non-glandular-haired subtracted ...    32   0.50 
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 483

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 1   tagcgtggtcgcggtcgaggtaca 24
           |||||||||||||| |||||||||
Sbjct: 475 tagcgtggtcgcggccgaggtaca 452
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 181

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   agcgtggtcgcggtcgaggtacag 25
           ||||||||||||| ||||||||||
Sbjct: 181 agcgtggtcgcggccgaggtacag 158
>gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 69

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  tagcgtggtcgcggtcgaggtaca 24
          |||||||||||||| |||||||||
Sbjct: 1  tagcgtggtcgcggccgaggtaca 24
>gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 390

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 2  agcgtggtcgcggtcgaggtaca 24
          ||||||||||||| |||||||||
Sbjct: 2  agcgtggtcgcggccgaggtaca 24
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 327

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  tagcgtggtcgcggtcgaggtac 23
          |||||||||||||| ||||||||
Sbjct: 1  tagcgtggtcgcggccgaggtac 23
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 365

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 1   tagcgtggtcgcggtcgaggtac 23
           |||||||||||||| ||||||||
Sbjct: 365 tagcgtggtcgcggccgaggtac 343
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 440

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 2   agcgtggtcgcggtcgaggtacagaag 28
           ||||||||||||| |||||||| ||||
Sbjct: 440 agcgtggtcgcggccgaggtacggaag 414
>gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 227

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 3   gcgtggtcgcggtcgaggtacag 25
           |||||||||||| ||||||||||
Sbjct: 227 gcgtggtcgcggccgaggtacag 205
>gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x varia 4-day-old Medicago sativa
          subsp. x varia cDNA, mRNA sequence
          Length = 795

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  tagcgtggtcgcggtcgaggtac 23
          |||||||||||||| ||||||||
Sbjct: 46 tagcgtggtcgcggccgaggtac 68
>gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 182

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 2   agcgtggtcgcggtcgaggtac 23
           ||||||||||||| ||||||||
Sbjct: 182 agcgtggtcgcggccgaggtac 161
>gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 225

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 3  gcgtggtcgcggtcgaggtaca 24
          |||||||||||| |||||||||
Sbjct: 1  gcgtggtcgcggccgaggtaca 22
>gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 156

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 393

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 477

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 366

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 248

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 384

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 330

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 178

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 2   agcgtggtcgcggtcgaggtac 23
           ||||||||||||| ||||||||
Sbjct: 178 agcgtggtcgcggccgaggtac 157
>gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 421

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 2  agcgtggtcgcggtcgaggtac 23
          ||||||||||||| ||||||||
Sbjct: 1  agcgtggtcgcggccgaggtac 22
>gb|AJ888491.1|AJ888491 AJ888491 Medicago sativa subsp. x varia 4-day-old Medicago sativa
           subsp. x varia cDNA, mRNA sequence
          Length = 787

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 28/32 (87%)
 Strand = Plus / Minus

                                           
Query: 1   tagcgtggtcgcggtcgaggtacagaagtaga 32
           ||||||||||||||  |||| ||| |||||||
Sbjct: 533 tagcgtggtcgcggcngaggnacaaaagtaga 502
>gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x varia 4-day-old Medicago sativa
           subsp. x varia cDNA, mRNA sequence
          Length = 470

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 2   agcgtggtcgcggtcgaggtac 23
           ||||||||||||| ||||||||
Sbjct: 470 agcgtggtcgcggccgaggtac 449
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 356

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 2   agcgtggtcgcggtcgaggta 22
           ||||||||||||| |||||||
Sbjct: 356 agcgtggtcgcggccgaggta 336
>gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 380

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                               
Query: 2  agcgtggtcgcggtcgaggta 22
          ||||||||||||| |||||||
Sbjct: 1  agcgtggtcgcggccgaggta 21
>gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 351

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                               
Query: 2  agcgtggtcgcggtcgaggta 22
          ||||||||||||| |||||||
Sbjct: 1  agcgtggtcgcggccgaggta 21
>gb|CO513882.1|CO513882 s13dSG73F1000079_156426 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 610

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 63  tcctgaaaaagtcaaaa 79
           |||||||||||||||||
Sbjct: 408 tcctgaaaaagtcaaaa 424
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 264

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                              
Query: 2  agcgtggtcgcggtcgaggt 21
          ||||||||||||| ||||||
Sbjct: 2  agcgtggtcgcggccgaggt 21
>gb|AW698348.1|AW698348 G79 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 652

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                              
Query: 2  agcgtggtcgcggtcgaggt 21
          ||||||||||||| ||||||
Sbjct: 1  agcgtggtcgcggccgaggt 20
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 274

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                              
Query: 3  gcgtggtcgcggtcgaggta 22
          |||||||||||| |||||||
Sbjct: 1  gcgtggtcgcggccgaggta 20
>gb|AW698353.1|AW698353 g38 glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 386

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  tagcgtggtcgcggtc 16
          ||||||||||||||||
Sbjct: 59 tagcgtggtcgcggtc 74
>gb|AW698396.1|AW698396 G243 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 316

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 1   tagcgtggtcgcggtcgagg 20
           |||||||||||||| |||||
Sbjct: 309 tagcgtggtcgcggccgagg 290
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 251

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 2   agcgtggtcgcggtcgaggt 21
           ||||||||||||| ||||||
Sbjct: 251 agcgtggtcgcggccgaggt 232
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 289

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 2   agcgtggtcgcggtcgaggt 21
           ||||||||||||| ||||||
Sbjct: 289 agcgtggtcgcggccgaggt 270
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 354

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 2   agcgtggtcgcggtcgaggt 21
           ||||||||||||| ||||||
Sbjct: 354 agcgtggtcgcggccgaggt 335
>gb|AW698707.1|AW698707 R1 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 519

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                              
Query: 2  agcgtggtcgcggtcgaggt 21
          ||||||||||||| ||||||
Sbjct: 2  agcgtggtcgcggccgaggt 21
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
          cDNA, mRNA sequence
          Length = 212

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                              
Query: 2  agcgtggtcgcggtcgaggt 21
          ||||||||||||| ||||||
Sbjct: 1  agcgtggtcgcggccgaggt 20
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1165
Number of Sequences: 7669
Number of extensions: 1165
Number of successful extensions: 371
Number of sequences better than  0.5: 36
Number of HSP's better than  0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 36
length of query: 697
length of database: 3,745,706
effective HSP length: 16
effective length of query: 681
effective length of database: 3,623,002
effective search space: 2467264362
effective search space used: 2467264362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)