BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516359.1|CO516359 s13dSG99E1100085_446046 Glandular tr... 34 0.094
gb|CO516240.1|CO516240 s13dSG69B0300025_445808 Glandular tr... 32 0.37
>gb|CO516359.1|CO516359 s13dSG99E1100085_446046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 474
Score = 34.2 bits (17), Expect = 0.094
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 337 cacggaccagatgacga 353
|||||||||||||||||
Sbjct: 406 cacggaccagatgacga 422
>gb|CO516240.1|CO516240 s13dSG69B0300025_445808 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 406
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 77 ttgtcctttgttcaat 92
||||||||||||||||
Sbjct: 9 ttgtcctttgttcaat 24
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1145
Number of Sequences: 7669
Number of extensions: 1145
Number of successful extensions: 313
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 2
length of query: 526
length of database: 3,745,706
effective HSP length: 16
effective length of query: 510
effective length of database: 3,623,002
effective search space: 1847731020
effective search space used: 1847731020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)