BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBN10e11.xg.2.2
         (581 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|X88845.1|MSNUM1GEN  M.sativa mRNA for nuM1 protein             34   0.10 
gb|CO513820.1|CO513820  s13dSG73A0600037_156302 Glandular tr...    32   0.41 

>emb|X88845.1|MSNUM1GEN M.sativa mRNA for nuM1 protein
          Length = 2255

 Score = 34.2 bits (17), Expect = 0.10
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 165  cagttttggtaatttta 181
            |||||||||||||||||
Sbjct: 2099 cagttttggtaatttta 2115



>gb|CO513820.1|CO513820 s13dSG73A0600037_156302 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 540

 Score = 32.2 bits (16), Expect = 0.41
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 390 gactaccatgtctcaa 405
           ||||||||||||||||
Sbjct: 260 gactaccatgtctcaa 275



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 863
Number of Sequences: 7669
Number of extensions: 863
Number of successful extensions: 208
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 2
length of query: 581
length of database: 3,745,706
effective HSP length: 16
effective length of query: 565
effective length of database: 3,623,002
effective search space: 2046996130
effective search space used: 2046996130
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)