BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular tr... 54 1e-007
gb|CO512644.1|CO512644 s13dSG13G1100084_121214 Glandular tr... 32 0.49
gb|CO513965.1|CO513965 s13dSG71G0100004_156592 Glandular tr... 32 0.49
gb|CO514700.1|CO514700 s13dSG55A0800065_328060 Glandular tr... 32 0.49
gb|AF079404.1|AF079404 Medicago sativa subsp. X varia cell ... 32 0.49
emb|AX008931.1| Sequence 1 from Patent WO9964451 32 0.49
dbj|BD210105.1| Plant protein having repeated WD40 motif, n... 32 0.49
>gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 54.0 bits (27), Expect = 1e-007
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 424 aaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||||||| ||||||||||| || || ||||| ||||||||||| | |||||||| ||
Sbjct: 304 aaggtgcgggaagagttgtagactaagatggattaactatctgagaactgacctcaaaag 363
Query: 484 agg 486
|||
Sbjct: 364 agg 366
>gb|CO512644.1|CO512644 s13dSG13G1100084_121214 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 32.2 bits (16), Expect = 0.49
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 344 gaggatgagaaactcatgaa 363
||||||||||||| ||||||
Sbjct: 334 gaggatgagaaacacatgaa 315
>gb|CO513965.1|CO513965 s13dSG71G0100004_156592 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 632 ctgaggcagaaaggca 647
||||||||||||||||
Sbjct: 313 ctgaggcagaaaggca 328
>gb|CO514700.1|CO514700 s13dSG55A0800065_328060 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 32.2 bits (16), Expect = 0.49
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 344 gaggatgagaaactcatgaa 363
||||||||||||| ||||||
Sbjct: 283 gaggatgagaaacacatgaa 264
>gb|AF079404.1|AF079404 Medicago sativa subsp. X varia cell cycle switch protein (ccs52)
mRNA, complete cds
Length = 1988
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 297 cttgctgctacaagca 312
||||||||||||||||
Sbjct: 778 cttgctgctacaagca 763
>emb|AX008931.1| Sequence 1 from Patent WO9964451
Length = 2006
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 297 cttgctgctacaagca 312
||||||||||||||||
Sbjct: 778 cttgctgctacaagca 763
>dbj|BD210105.1| Plant protein having repeated WD40 motif, nucleic acid encoding the
protein and utilization of the same
Length = 2006
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 297 cttgctgctacaagca 312
||||||||||||||||
Sbjct: 778 cttgctgctacaagca 763
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1196
Number of Sequences: 7669
Number of extensions: 1196
Number of successful extensions: 335
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 7
length of query: 687
length of database: 3,745,706
effective HSP length: 16
effective length of query: 671
effective length of database: 3,623,002
effective search space: 2431034342
effective search space used: 2431034342
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)