BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ24c04.pg.2.1
(448 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF020271.1|AF020271 Medicago sativa mitochondrial malate... 36 0.020
gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein Ms... 32 0.32
emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like pr... 32 0.32
>gb|AF020271.1|AF020271 Medicago sativa mitochondrial malate dehydrogenase precursor (mmdh)
mRNA, nuclear gene encoding mitochondrial protein,
complete cds
Length = 1467
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34 attgcatagtatatgaaa 51
||||||||||||||||||
Sbjct: 1382 attgcatagtatatgaaa 1365
>gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein MsJ1 gene, complete cds
Length = 4449
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 40 tagtatatgaaaatta 55
||||||||||||||||
Sbjct: 3693 tagtatatgaaaatta 3708
>emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like protein
Length = 1545
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 40 tagtatatgaaaatta 55
||||||||||||||||
Sbjct: 1496 tagtatatgaaaatta 1511
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 437
Number of Sequences: 7669
Number of extensions: 437
Number of successful extensions: 98
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 4
length of query: 448
length of database: 3,745,706
effective HSP length: 15
effective length of query: 433
effective length of database: 3,630,671
effective search space: 1572080543
effective search space used: 1572080543
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)