BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAR2a06.yg.3.1
         (612 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO514559.1|CO514559  s13dSG42B1100093_327778 Glandular tr...    32   0.43 
gb|CO513436.1|CO513436  s13dSG10B0700057_130036 Glandular tr...    28   6.8  
gb|CO513625.1|CO513625  s13dSG16G0800056_140032 Glandular tr...    28   6.8  
gb|M91076.1|ALFMSENODC  Medicago sativa leghemoglobin (ENOD1...    28   6.8  
gb|M32883.1|ALFLEGHEMA  Medicago sativa leghemoglobin gene, ...    28   6.8  
gb|AY651248.1|  Medicago sativa protein phosphatase 2c (npp2...    28   6.8  

>gb|CO514559.1|CO514559 s13dSG42B1100093_327778 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 573

 Score = 32.2 bits (16), Expect = 0.43
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 413 caatggttatcgccat 428
           ||||||||||||||||
Sbjct: 347 caatggttatcgccat 362



>gb|CO513436.1|CO513436 s13dSG10B0700057_130036 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 576

 Score = 28.2 bits (14), Expect = 6.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 229 aagctgaactccaa 242
           ||||||||||||||
Sbjct: 437 aagctgaactccaa 450



>gb|CO513625.1|CO513625 s13dSG16G0800056_140032 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 255

 Score = 28.2 bits (14), Expect = 6.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 286 agatggtgggagga 299
           ||||||||||||||
Sbjct: 37  agatggtgggagga 50



>gb|M91076.1|ALFMSENODC Medicago sativa leghemoglobin (ENOD10-3) mRNA, complete cds
          Length = 1459

 Score = 28.2 bits (14), Expect = 6.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 481 gaaatactcactaa 494
           ||||||||||||||
Sbjct: 242 gaaatactcactaa 229



>gb|M32883.1|ALFLEGHEMA Medicago sativa leghemoglobin gene, complete cds
          Length = 3228

 Score = 28.2 bits (14), Expect = 6.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 551 ttgctctagagaag 564
           ||||||||||||||
Sbjct: 216 ttgctctagagaag 229



>gb|AY651248.1| Medicago sativa protein phosphatase 2c (npp2c1) mRNA, complete cds
          Length = 2281

 Score = 28.2 bits (14), Expect = 6.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                              
Query: 550  tttgctctagagaagata 567
            |||| |||||||||||||
Sbjct: 1000 tttgttctagagaagata 1017



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:40 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 856
Number of Sequences: 7669
Number of extensions: 856
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 8
length of query: 612
length of database: 3,745,706
effective HSP length: 16
effective length of query: 596
effective length of database: 3,623,002
effective search space: 2159309192
effective search space used: 2159309192
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)