BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO517068.1|CO517068 s13dSG29A0600049_468682 Glandular tr... 30 0.87
emb|AX776636.1| Sequence 5 from Patent WO02102841 30 0.87
emb|AJ418368.1|MSA418368 Medicago sativa mRNA for nodulatio... 30 0.87
emb|AJ884582.1| Medicago sativa subsp. coerulea partial nor... 30 0.87
gb|AJ410116.1|AJ410116 AJ410116 Medicago sativa library (Ka... 28 3.4
gb|CO511701.1|CO511701 s13dSG01B0200025_103302 Glandular tr... 28 3.4
gb|CO511845.1|CO511845 s13dSG02F0800075_103590 Glandular tr... 28 3.4
gb|CO511920.1|CO511920 s13dSG05E1100087_103740 Glandular tr... 28 3.4
gb|CO512131.1|CO512131 s13dSG34C0400022_108582 Glandular tr... 28 3.4
gb|CO512226.1|CO512226 s13dSG03E0300019_113966 Glandular tr... 28 3.4
gb|CO512412.1|CO512412 s13dSG80F0300027_114338 Glandular tr... 28 3.4
gb|CO512650.1|CO512650 s13dSG13H0900076_121226 Glandular tr... 28 3.4
gb|CO512807.1|CO512807 s13dSG20A0100001_121540 Glandular tr... 28 3.4
gb|CO513268.1|CO513268 s13dSG37A0300017_129700 Glandular tr... 28 3.4
gb|CO513407.1|CO513407 s13dSG38F1100091_129978 Glandular tr... 28 3.4
gb|CO513757.1|CO513757 s13dSG15G1100084_140296 Glandular tr... 28 3.4
gb|CO513927.1|CO513927 s13dSG71C0500034_156516 Glandular tr... 28 3.4
gb|CO514019.1|CO514019 s13dSG72D0300026_156700 Glandular tr... 28 3.4
gb|CO514493.1|CO514493 s13dSG43D0400032_327646 Glandular tr... 28 3.4
gb|CO515782.1|CO515782 s13dSG77H0200028_419713 Glandular tr... 28 3.4
gb|CO516227.1|CO516227 s13dSG69A0100001_445782 Glandular tr... 28 3.4
gb|CO516273.1|CO516273 s13dSG69D1200102_445874 Glandular tr... 28 3.4
gb|CO516537.1|CO516537 s13dSG57C0500035_446402 Glandular tr... 28 3.4
gb|CO516559.1|CO516559 s13dSG57E0700053_446446 Glandular tr... 28 3.4
gb|CO516688.1|CO516688 s13dSG74B0900075_446704 Glandular tr... 28 3.4
gb|CO517019.1|CO517019 s13dSG31B0400029_468584 Glandular tr... 28 3.4
gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein Ms... 28 3.4
gb|AY219848.1| Medicago sativa polygalactorunase PG11 precu... 28 3.4
gb|AY563141.1| Medicago sativa calcium/calmodulin-regulated... 28 3.4
emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like pr... 28 3.4
>gb|CO517068.1|CO517068 s13dSG29A0600049_468682 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 429
Score = 30.2 bits (15), Expect = 0.87
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 atttcatatttttcc 77
|||||||||||||||
Sbjct: 219 atttcatatttttcc 233
>emb|AX776636.1| Sequence 5 from Patent WO02102841
Length = 3339
Score = 30.2 bits (15), Expect = 0.87
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 ccaagattatttctg 174
|||||||||||||||
Sbjct: 829 ccaagattatttctg 815
>emb|AJ418368.1|MSA418368 Medicago sativa mRNA for nodulation receptor kinase (nork gene),
wild type allele DMI2
Length = 3339
Score = 30.2 bits (15), Expect = 0.87
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 ccaagattatttctg 174
|||||||||||||||
Sbjct: 829 ccaagattatttctg 815
>emb|AJ884582.1| Medicago sativa subsp. coerulea partial nork gene for nodulation
receptor kinase, exons 2-4 and 7-9
Length = 1989
Score = 30.2 bits (15), Expect = 0.87
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 ccaagattatttctg 174
|||||||||||||||
Sbjct: 201 ccaagattatttctg 187
>gb|AJ410116.1|AJ410116 AJ410116 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U310, mRNA sequence
Length = 871
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 ttgttgctcctggt 29
||||||||||||||
Sbjct: 514 ttgttgctcctggt 527
>gb|CO511701.1|CO511701 s13dSG01B0200025_103302 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 331
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 47 gaggaaaagaaagc 60
>gb|CO511845.1|CO511845 s13dSG02F0800075_103590 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 480
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO511920.1|CO511920 s13dSG05E1100087_103740 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 610
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 aataaaggcagtat 154
||||||||||||||
Sbjct: 247 aataaaggcagtat 260
>gb|CO512131.1|CO512131 s13dSG34C0400022_108582 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO512226.1|CO512226 s13dSG03E0300019_113966 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 200 gaggaaaagaaagc 213
>gb|CO512412.1|CO512412 s13dSG80F0300027_114338 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 484
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 actttccaagatta 168
||||||||||||||
Sbjct: 178 actttccaagatta 191
>gb|CO512650.1|CO512650 s13dSG13H0900076_121226 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 326
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 43 gaggaaaagaaagc 56
>gb|CO512807.1|CO512807 s13dSG20A0100001_121540 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 376
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 93 gaggaaaagaaagc 106
>gb|CO513268.1|CO513268 s13dSG37A0300017_129700 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 479
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO513407.1|CO513407 s13dSG38F1100091_129978 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 479
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO513757.1|CO513757 s13dSG15G1100084_140296 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 212
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO513927.1|CO513927 s13dSG71C0500034_156516 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 419
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 135 gaggaaaagaaagc 148
>gb|CO514019.1|CO514019 s13dSG72D0300026_156700 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 337
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 56 gaggaaaagaaagc 69
>gb|CO514493.1|CO514493 s13dSG43D0400032_327646 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 479
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO515782.1|CO515782 s13dSG77H0200028_419713 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO516227.1|CO516227 s13dSG69A0100001_445782 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 453
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 199 gaggaaaagaaagc 212
>gb|CO516273.1|CO516273 s13dSG69D1200102_445874 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 465
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 tcaagtactcttca 125
||||||||||||||
Sbjct: 28 tcaagtactcttca 41
>gb|CO516537.1|CO516537 s13dSG57C0500035_446402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 330
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 53 gaggaaaagaaagc 66
>gb|CO516559.1|CO516559 s13dSG57E0700053_446446 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 atctcagcaatcac 48
||||||||||||||
Sbjct: 122 atctcagcaatcac 109
>gb|CO516688.1|CO516688 s13dSG74B0900075_446704 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 340
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 57 gaggaaaagaaagc 70
>gb|CO517019.1|CO517019 s13dSG31B0400029_468584 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 337
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gaggaaaagaaagc 217
||||||||||||||
Sbjct: 54 gaggaaaagaaagc 67
>gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein MsJ1 gene, complete cds
Length = 4449
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 gataacaccaaata 144
||||||||||||||
Sbjct: 88 gataacaccaaata 101
>gb|AY219848.1| Medicago sativa polygalactorunase PG11 precursor, gene, complete cds
Length = 2213
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gtatactttccaag 164
||||||||||||||
Sbjct: 1523 gtatactttccaag 1510
>gb|AY563141.1| Medicago sativa calcium/calmodulin-regulated receptor-like kinase
mRNA, complete cds
Length = 1798
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 gttctcaagtactc 121
||||||||||||||
Sbjct: 1091 gttctcaagtactc 1078
>emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like protein
Length = 1545
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 gataacaccaaata 144
||||||||||||||
Sbjct: 88 gataacaccaaata 101
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1082
Number of Sequences: 7669
Number of extensions: 1082
Number of successful extensions: 419
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 30
length of query: 315
length of database: 3,745,706
effective HSP length: 15
effective length of query: 300
effective length of database: 3,630,671
effective search space: 1089201300
effective search space used: 1089201300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)