BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD10d05.sg.3.3
(1563 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512289.1|CO512289 s13dSG68C0200006_114092 Glandular tr... 76 8e-014
>gb|CO512289.1|CO512289 s13dSG68C0200006_114092 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 462
Score = 75.8 bits (38), Expect = 8e-014
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 407 atggtctccaagaagaagtacatctacaccatcgacgacgactgcttcgttgccaaggac 466
||||| || ||||||||||| || || ||||| || || || ||||| ||||| || |||
Sbjct: 336 atggtttctaagaagaagtatatttataccattgatgatgattgctttgttgcgaaagac 395
Query: 467 ccatctggcaaggatatcaatgctcttgagcagcacatcaagaacctcctcagcccatcc 526
||| ||||| | || ||||| || |||||||||||||| ||||| |||||||| ||||||
Sbjct: 396 ccaactggccatgagatcaaggcacttgagcagcacattaagaatctcctcagtccatcc 455
Query: 527 ac 528
||
Sbjct: 456 ac 457
Score = 54.0 bits (27), Expect = 3e-007
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 176 ctcgacatcgtgatcccgacgatccgcaacctcgacttcctggagatgtgg 226
||||||||||| ||||| || |||||||||||||| ||||| | |||||||
Sbjct: 105 ctcgacatcgttatcccaaccatccgcaacctcgatttcctcgtgatgtgg 155
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3144
Number of Sequences: 7669
Number of extensions: 3144
Number of successful extensions: 816
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 2
length of query: 1563
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1547
effective length of database: 3,623,002
effective search space: 5604784094
effective search space used: 5604784094
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)