BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAC22h02.sg.3.6
         (2204 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY841877.1|  Medicago sativa ribosomal protein S12 (rps12...    36   0.10 

>gb|AY841877.1| Medicago sativa ribosomal protein S12 (rps12) gene, partial cds;
            ribosomal protein S7 (rps7) gene, complete cds; and NADH
            dehydrogenase subunit B (ndhB) gene, partial cds;
            chloroplast
          Length = 3347

 Score = 36.2 bits (18), Expect = 0.10
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                      
Query: 6    cgagaatttttaggaaagcgtttcat 31
            |||||||||||| |||||| ||||||
Sbjct: 1565 cgagaatttttatgaaagcctttcat 1590



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4569
Number of Sequences: 7669
Number of extensions: 4569
Number of successful extensions: 1541
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 2
length of query: 2204
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2187
effective length of database: 3,615,333
effective search space: 7906733271
effective search space used: 7906733271
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)