BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513721.1|CO513721 s13dSG15C1200086_140224 Glandular tr... 36 0.056
gb|CO514155.1|CO514155 s13dSG75H0900076_156972 Glandular tr... 36 0.056
gb|CO514763.1|CO514763 s13dSG55H0700064_328186 Glandular tr... 36 0.056
gb|CO516996.1|CO516996 s13dSG81F0800073_468538 Glandular tr... 36 0.056
gb|AW698418.1|AW698418 G266 glandular-haired subtracted cDN... 34 0.22
gb|CO515802.1|CO515802 s13dSG54B1100091_421143 Glandular tr... 34 0.22
>gb|CO513721.1|CO513721 s13dSG15C1200086_140224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 508
Score = 36.2 bits (18), Expect = 0.056
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 58 cacagcagcagcaacaacaaca 79
|||||||| |||||||||||||
Sbjct: 466 cacagcaggagcaacaacaaca 445
>gb|CO514155.1|CO514155 s13dSG75H0900076_156972 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 36.2 bits (18), Expect = 0.056
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 58 cacagcagcagcaacaacaaca 79
|||||||| |||||||||||||
Sbjct: 192 cacagcaggagcaacaacaaca 171
>gb|CO514763.1|CO514763 s13dSG55H0700064_328186 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 36.2 bits (18), Expect = 0.056
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 58 cacagcagcagcaacaacaaca 79
|||||||| |||||||||||||
Sbjct: 348 cacagcaggagcaacaacaaca 327
>gb|CO516996.1|CO516996 s13dSG81F0800073_468538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 487
Score = 36.2 bits (18), Expect = 0.056
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 58 cacagcagcagcaacaacaaca 79
|||||||| |||||||||||||
Sbjct: 178 cacagcaggagcaacaacaaca 157
>gb|AW698418.1|AW698418 G266 glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 273
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 63 cagcagcaacaacaaca 79
|||||||||||||||||
Sbjct: 65 cagcagcaacaacaaca 49
>gb|CO515802.1|CO515802 s13dSG54B1100091_421143 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 918 gtggagaagatggagga 934
|||||||||||||||||
Sbjct: 39 gtggagaagatggagga 55
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2083
Number of Sequences: 7669
Number of extensions: 2083
Number of successful extensions: 551
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 8
length of query: 1220
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1204
effective length of database: 3,623,002
effective search space: 4362094408
effective search space used: 4362094408
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)