BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF019146.2.1
(1761 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX468574.1| Sequence 15 from Patent WO0238745 36 0.081
emb|AJ293274.1|MVA293274 Medicago sativa subsp. x varia mRN... 36 0.081
>emb|AX468574.1| Sequence 15 from Patent WO0238745
Length = 1495
Score = 36.2 bits (18), Expect = 0.081
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 633 cggtggcagcggtggaag 650
||||||||||||||||||
Sbjct: 315 cggtggcagcggtggaag 332
>emb|AJ293274.1|MVA293274 Medicago sativa subsp. x varia mRNA for MEK map kinase kinase
(simkk gene)
Length = 1536
Score = 36.2 bits (18), Expect = 0.081
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 633 cggtggcagcggtggaag 650
||||||||||||||||||
Sbjct: 331 cggtggcagcggtggaag 348
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2173
Number of Sequences: 7669
Number of extensions: 2173
Number of successful extensions: 424
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 2
length of query: 1761
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1745
effective length of database: 3,623,002
effective search space: 6322138490
effective search space used: 6322138490
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)