BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228841.2.1
(621 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512560.1|CO512560 s13dSG08E1000071_121046 Glandular tr... 32 0.44
gb|CO516827.1|CO516827 s13dSG98C0200006_446982 Glandular tr... 32 0.44
gb|AY043242.1| Medicago sativa cyclin A2 (CycA2.2) gene, co... 32 0.44
>gb|CO512560.1|CO512560 s13dSG08E1000071_121046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 362 caaatggttgaagaaa 377
||||||||||||||||
Sbjct: 91 caaatggttgaagaaa 76
>gb|CO516827.1|CO516827 s13dSG98C0200006_446982 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 555 tgtggaaagtaaaatt 570
||||||||||||||||
Sbjct: 217 tgtggaaagtaaaatt 202
>gb|AY043242.1| Medicago sativa cyclin A2 (CycA2.2) gene, complete cds
Length = 6860
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 515 catgtatgttgtttgt 530
||||||||||||||||
Sbjct: 2554 catgtatgttgtttgt 2569
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1145
Number of Sequences: 7669
Number of extensions: 1145
Number of successful extensions: 273
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 4
length of query: 621
length of database: 3,745,706
effective HSP length: 16
effective length of query: 605
effective length of database: 3,623,002
effective search space: 2191916210
effective search space used: 2191916210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)