BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511730.1|CO511730 s13dSG01D1000090_103360 Glandular tr... 34 0.11
gb|CO516388.1|CO516388 s13dSG27B0100009_446104 Glandular tr... 34 0.11
gb|CO516884.1|CO516884 s13dSG58A1000071_468314 Glandular tr... 32 0.42
>gb|CO511730.1|CO511730 s13dSG01D1000090_103360 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 613
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 171 gagaagaagaggaagca 187
|||||||||||||||||
Sbjct: 191 gagaagaagaggaagca 175
>gb|CO516388.1|CO516388 s13dSG27B0100009_446104 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 439
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 171 gagaagaagaggaagca 187
|||||||||||||||||
Sbjct: 230 gagaagaagaggaagca 214
>gb|CO516884.1|CO516884 s13dSG58A1000071_468314 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 437
Score = 32.2 bits (16), Expect = 0.42
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 170 agagaagaagaggaag 185
||||||||||||||||
Sbjct: 292 agagaagaagaggaag 307
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1652
Number of Sequences: 7669
Number of extensions: 1652
Number of successful extensions: 750
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 3
length of query: 595
length of database: 3,745,706
effective HSP length: 16
effective length of query: 579
effective length of database: 3,623,002
effective search space: 2097718158
effective search space used: 2097718158
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)