BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515572.1|CO515572 s13dSG53H1100096_418203 Glandular tr... 38 0.008
gb|CO517136.1|CO517136 s13dSG29H0800076_468818 Glandular tr... 32 0.49
gb|DQ122844.1| Medicago sativa clone ND8 unknown mRNA 32 0.49
>gb|CO515572.1|CO515572 s13dSG53H1100096_418203 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 302
Score = 38.2 bits (19), Expect = 0.008
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||| ||||||||||||||||
Sbjct: 115 atcctcttcctcttcttcttcct 93
>gb|CO517136.1|CO517136 s13dSG29H0800076_468818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 212 gtagtagtatatatac 227
||||||||||||||||
Sbjct: 17 gtagtagtatatatac 32
>gb|DQ122844.1| Medicago sativa clone ND8 unknown mRNA
Length = 597
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 668 tcctcttcttcttcct 683
||||||||||||||||
Sbjct: 187 tcctcttcttcttcct 202
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1578
Number of Sequences: 7669
Number of extensions: 1578
Number of successful extensions: 405
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 3
length of query: 687
length of database: 3,745,706
effective HSP length: 16
effective length of query: 671
effective length of database: 3,623,002
effective search space: 2431034342
effective search space used: 2431034342
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)