BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4790360.2.1
         (667 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO513044.1|CO513044  s13dSG89A0500033_122014 Glandular tr...    32   0.47 
gb|CO514674.1|CO514674  s13dSG46G0100008_328008 Glandular tr...    32   0.47 
gb|CO514824.1|CO514824  s13dSG59G0100008_328308 Glandular tr...    32   0.47 
gb|CO515715.1|CO515715  s13dSG77A0400033_419579 Glandular tr...    32   0.47 
emb|CQ760959.1|  Sequence 4 from Patent WO2004002216               32   0.47 
emb|CQ760962.1|  Sequence 7 from Patent WO2004002216               32   0.47 

>gb|CO513044.1|CO513044 s13dSG89A0500033_122014 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 576

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 632 aaggagttttgttgta 647
           ||||||||||||||||
Sbjct: 365 aaggagttttgttgta 380



>gb|CO514674.1|CO514674 s13dSG46G0100008_328008 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 555

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 632 aaggagttttgttgta 647
           ||||||||||||||||
Sbjct: 347 aaggagttttgttgta 362



>gb|CO514824.1|CO514824 s13dSG59G0100008_328308 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 367

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 296 gaaagaaaagaatgca 311
           ||||||||||||||||
Sbjct: 200 gaaagaaaagaatgca 215



>gb|CO515715.1|CO515715 s13dSG77A0400033_419579 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 523

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 632 aaggagttttgttgta 647
           ||||||||||||||||
Sbjct: 358 aaggagttttgttgta 373



>emb|CQ760959.1| Sequence 4 from Patent WO2004002216
          Length = 634

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 185 aacacacatgcacttt 200
           ||||||||||||||||
Sbjct: 172 aacacacatgcacttt 187



>emb|CQ760962.1| Sequence 7 from Patent WO2004002216
          Length = 1424

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 185 aacacacatgcacttt 200
           ||||||||||||||||
Sbjct: 172 aacacacatgcacttt 187



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1508
Number of Sequences: 7669
Number of extensions: 1508
Number of successful extensions: 490
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 6
length of query: 667
length of database: 3,745,706
effective HSP length: 16
effective length of query: 651
effective length of database: 3,623,002
effective search space: 2358574302
effective search space used: 2358574302
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)