BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4005867.2.1
(1967 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513506.1|CO513506 s13dSG12B1000077_139794 Glandular tr... 38 0.023
gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box pr... 36 0.091
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 36 0.091
>gb|CO513506.1|CO513506 s13dSG12B1000077_139794 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 603
Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1547 ccggcgccggcaccagcaa 1565
|||||||||||||||||||
Sbjct: 541 ccggcgccggcaccagcaa 523
>gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box protein mRNA, complete cds
Length = 965
Score = 36.2 bits (18), Expect = 0.091
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1714 gcatacatcacatcatat 1731
||||||||||||||||||
Sbjct: 950 gcatacatcacatcatat 933
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 36.2 bits (18), Expect = 0.091
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1714 gcatacatcacatcatat 1731
||||||||||||||||||
Sbjct: 6022 gcatacatcacatcatat 6005
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2372
Number of Sequences: 7669
Number of extensions: 2372
Number of successful extensions: 624
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 3
length of query: 1967
length of database: 3,745,706
effective HSP length: 17
effective length of query: 1950
effective length of database: 3,615,333
effective search space: 7049899350
effective search space used: 7049899350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)