BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995470.2.1
(744 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516311.1|CO516311 s13dSG69H0800074_445950 Glandular tr... 36 0.034
gb|AF235958.2|AF235958 Medicago sativa heat shock transcrip... 34 0.13
gb|AF494082.1| Medicago sativa heat shock transcription fac... 34 0.13
>gb|CO516311.1|CO516311 s13dSG69H0800074_445950 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 527
Score = 36.2 bits (18), Expect = 0.034
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 122 gagctgatctccaagctc 139
||||||||||||||||||
Sbjct: 234 gagctgatctccaagctc 251
>gb|AF235958.2|AF235958 Medicago sativa heat shock transcription factor (HSFA4-6) mRNA,
complete cds
Length = 1979
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 541 ctttgtttttaatttgt 557
|||||||||||||||||
Sbjct: 403 ctttgtttttaatttgt 419
>gb|AF494082.1| Medicago sativa heat shock transcription factor (HSFA4) gene,
complete cds
Length = 2344
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 541 ctttgtttttaatttgt 557
|||||||||||||||||
Sbjct: 681 ctttgtttttaatttgt 697
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1113
Number of Sequences: 7669
Number of extensions: 1113
Number of successful extensions: 269
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 3
length of query: 744
length of database: 3,745,706
effective HSP length: 16
effective length of query: 728
effective length of database: 3,623,002
effective search space: 2637545456
effective search space used: 2637545456
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)