BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3922840.2.1
         (683 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW698381.1|AW698381  G227 glandular-haired subtracted cDN...    34   0.12 
gb|AW698439.1|AW698439  G293 glandular-haired subtracted cDN...    34   0.12 
gb|CO511951.1|CO511951  s13dSG05H1200104_103802 Glandular tr...    34   0.12 
emb|AJ248323.1|MSA248323  Medicago sativa subsp. X varia mRN...    34   0.12 
gb|CO516297.1|CO516297  s13dSG69G0100004_445922 Glandular tr...    32   0.49 

>gb|AW698381.1|AW698381 G227 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 324

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 522 gagcgagagcgagaaga 538
           |||||||||||||||||
Sbjct: 132 gagcgagagcgagaaga 116



>gb|AW698439.1|AW698439 G293 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 325

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 522 gagcgagagcgagaaga 538
           |||||||||||||||||
Sbjct: 132 gagcgagagcgagaaga 116



>gb|CO511951.1|CO511951 s13dSG05H1200104_103802 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 585

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 579 tcttgcctgcttaattc 595
           |||||||||||||||||
Sbjct: 299 tcttgcctgcttaattc 283



>emb|AJ248323.1|MSA248323 Medicago sativa subsp. X varia mRNA for basic blue protein (bab1
           gene)
          Length = 615

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 105 tatatactattatataa 121
           |||||||||||||||||
Sbjct: 558 tatatactattatataa 574



>gb|CO516297.1|CO516297 s13dSG69G0100004_445922 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 421

 Score = 32.2 bits (16), Expect = 0.49
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 505 aggagcagcaggacga 520
           ||||||||||||||||
Sbjct: 125 aggagcagcaggacga 140



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1286
Number of Sequences: 7669
Number of extensions: 1286
Number of successful extensions: 449
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 7
length of query: 683
length of database: 3,745,706
effective HSP length: 16
effective length of query: 667
effective length of database: 3,623,002
effective search space: 2416542334
effective search space used: 2416542334
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)