BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3848939.2.1
         (952 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF432225.1|  Medicago sativa GSK-3-like protein MsK4 mRNA...    34   0.17 
emb|AX774637.1|  Sequence 2 from Patent WO03035856                 34   0.17 

>gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA, complete cds
          Length = 1850

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 90  gtcgtcgtcgtcgtcat 106
           |||||||||||||||||
Sbjct: 464 gtcgtcgtcgtcgtcat 448



>emb|AX774637.1| Sequence 2 from Patent WO03035856
          Length = 1866

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 90  gtcgtcgtcgtcgtcat 106
           |||||||||||||||||
Sbjct: 464 gtcgtcgtcgtcgtcat 448



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1336
Number of Sequences: 7669
Number of extensions: 1336
Number of successful extensions: 425
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 4
length of query: 952
length of database: 3,745,706
effective HSP length: 16
effective length of query: 936
effective length of database: 3,623,002
effective search space: 3391129872
effective search space used: 3391129872
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)