BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3829517.2.1
         (913 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO515773.1|CO515773  s13dSG77F1200103_419695 Glandular tr...    34   0.17 
gb|AF129087.1|AF129087  Medicago sativa mitogen-activated pr...    34   0.17 

>gb|CO515773.1|CO515773 s13dSG77F1200103_419695 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 556

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 785 tttgtgatttcagagac 801
           |||||||||||||||||
Sbjct: 362 tttgtgatttcagagac 378



>gb|AF129087.1|AF129087 Medicago sativa mitogen-activated protein kinase homologue (TDY1)
            gene, complete cds
          Length = 7346

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 289  caaaagaaagctttgaa 305
            |||||||||||||||||
Sbjct: 3800 caaaagaaagctttgaa 3784



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1491
Number of Sequences: 7669
Number of extensions: 1491
Number of successful extensions: 383
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 3
length of query: 913
length of database: 3,745,706
effective HSP length: 16
effective length of query: 897
effective length of database: 3,623,002
effective search space: 3249832794
effective search space used: 3249832794
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)