BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3802485.2.1
         (1118 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO512056.1|CO512056  s13dSG18C1200086_108432 Glandular tr...    34   0.20 
gb|AJ888502.1|AJ888502  AJ888502 Medicago sativa subsp. x va...    34   0.20 
emb|AJ002486.1|MSAJ2486  Medicago sativa mRNA for protein ph...    34   0.20 
>gb|CO512056.1|CO512056 s13dSG18C1200086_108432 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 580

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 514 tcattctctatttccca 530
           |||||||||||||||||
Sbjct: 34  tcattctctatttccca 50
>gb|AJ888502.1|AJ888502 AJ888502 Medicago sativa subsp. x varia 4-day-old Medicago sativa
           subsp. x varia cDNA, mRNA sequence
          Length = 616

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 884 gttgatgttttcatttg 900
           |||||||||||||||||
Sbjct: 247 gttgatgttttcatttg 231
>emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein phosphatase 1, gamma subunit
          Length = 1554

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 107 gcaaagatgttcaagga 123
           |||||||||||||||||
Sbjct: 827 gcaaagatgttcaagga 843
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2581
Number of Sequences: 7669
Number of extensions: 2581
Number of successful extensions: 718
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 3
length of query: 1118
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1102
effective length of database: 3,623,002
effective search space: 3992548204
effective search space used: 3992548204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)