BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512056.1|CO512056 s13dSG18C1200086_108432 Glandular tr... 34 0.20
gb|AJ888502.1|AJ888502 AJ888502 Medicago sativa subsp. x va... 34 0.20
emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein ph... 34 0.20
>gb|CO512056.1|CO512056 s13dSG18C1200086_108432 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 580
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 514 tcattctctatttccca 530
|||||||||||||||||
Sbjct: 34 tcattctctatttccca 50
>gb|AJ888502.1|AJ888502 AJ888502 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 616
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 884 gttgatgttttcatttg 900
|||||||||||||||||
Sbjct: 247 gttgatgttttcatttg 231
>emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein phosphatase 1, gamma subunit
Length = 1554
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 107 gcaaagatgttcaagga 123
|||||||||||||||||
Sbjct: 827 gcaaagatgttcaagga 843
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2581
Number of Sequences: 7669
Number of extensions: 2581
Number of successful extensions: 718
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 3
length of query: 1118
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1102
effective length of database: 3,623,002
effective search space: 3992548204
effective search space used: 3992548204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)