BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3742548.2.1
         (554 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO515525.1|CO515525  s13dSG52G0800068_418109 Glandular tr...    34   0.099
gb|L25042.1|ALFACCASE  Medicago sativa acetyl-CoA carboxylas...    32   0.39 

>gb|CO515525.1|CO515525 s13dSG52G0800068_418109 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 514

 Score = 34.2 bits (17), Expect = 0.099
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 85  tttccaatctcatccaa 101
           |||||||||||||||||
Sbjct: 81  tttccaatctcatccaa 97



>gb|L25042.1|ALFACCASE Medicago sativa acetyl-CoA carboxylase (ACCase) mRNA, complete cds
          Length = 7175

 Score = 32.2 bits (16), Expect = 0.39
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 136 aaggagaacaataatg 151
           ||||||||||||||||
Sbjct: 57  aaggagaacaataatg 72



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 789
Number of Sequences: 7669
Number of extensions: 789
Number of successful extensions: 184
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 2
length of query: 554
length of database: 3,745,706
effective HSP length: 16
effective length of query: 538
effective length of database: 3,623,002
effective search space: 1949175076
effective search space used: 1949175076
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)