BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515135.1|CO515135 s13dSG40G0500040_399135 Glandular tr... 36 0.15
gb|CO515503.1|CO515503 s13dSG52D0800074_418065 Glandular tr... 36 0.15
gb|CO515878.1|CO515878 s13dSG91B1200095_421295 Glandular tr... 36 0.15
>gb|CO515135.1|CO515135 s13dSG40G0500040_399135 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 330
Score = 36.2 bits (18), Expect = 0.15
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 309 aggaggagcagcagcagc 326
||||||||||||||||||
Sbjct: 315 aggaggagcagcagcagc 298
>gb|CO515503.1|CO515503 s13dSG52D0800074_418065 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 431
Score = 36.2 bits (18), Expect = 0.15
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 309 aggaggagcagcagcagc 326
||||||||||||||||||
Sbjct: 263 aggaggagcagcagcagc 246
>gb|CO515878.1|CO515878 s13dSG91B1200095_421295 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 561
Score = 36.2 bits (18), Expect = 0.15
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 312 aggagcagcagcagcagc 329
||||||||||||||||||
Sbjct: 320 aggagcagcagcagcagc 303
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7254
Number of Sequences: 7669
Number of extensions: 7254
Number of successful extensions: 2101
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2093
Number of HSP's gapped (non-prelim): 7
length of query: 3330
length of database: 3,745,706
effective HSP length: 17
effective length of query: 3313
effective length of database: 3,615,333
effective search space: 11977598229
effective search space used: 11977598229
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)