BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.2
(860 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514185.1|CO514185 s13dSG70D0500042_157032 Glandular tr... 38 0.010
gb|CO514072.1|CO514072 s13dSG75A0300017_156806 Glandular tr... 34 0.16
gb|CO514344.1|CO514344 s13dSG84D0700058_157350 Glandular tr... 34 0.16
>gb|CO514185.1|CO514185 s13dSG70D0500042_157032 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 256
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 519 aaccaaataataataagta 537
|||||||||||||||||||
Sbjct: 192 aaccaaataataataagta 174
>gb|CO514072.1|CO514072 s13dSG75A0300017_156806 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 527 aataataagtataaaat 543
|||||||||||||||||
Sbjct: 4 aataataagtataaaat 20
>gb|CO514344.1|CO514344 s13dSG84D0700058_157350 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 517
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 524 aataataataagtataa 540
|||||||||||||||||
Sbjct: 319 aataataataagtataa 335
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1301
Number of Sequences: 7669
Number of extensions: 1301
Number of successful extensions: 338
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 3
length of query: 860
length of database: 3,745,706
effective HSP length: 16
effective length of query: 844
effective length of database: 3,623,002
effective search space: 3057813688
effective search space used: 3057813688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)