BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3148257.2.1
         (675 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF458700.1|  Medicago sativa putative ankyrin-kinase (apk...    38   0.008
gb|CO513778.1|CO513778  s13dSG82C0600038_156218 Glandular tr...    36   0.031
gb|CO512256.1|CO512256  s13dSG03G1200088_114026 Glandular tr...    32   0.48 
gb|CO514929.1|CO514929  s13dSG63B0800073_397363 Glandular tr...    32   0.48 
gb|CO515499.1|CO515499  s13dSG52C1200098_418057 Glandular tr...    32   0.48 
gb|CO517256.1|CO517256  s13dSG32F1000091_486108 Glandular tr...    32   0.48 
gb|L07042.1|ALFERKMAP  Medicago sativa MAP kinase MsERK1 mRN...    32   0.48 
emb|Z50800.1|MSASET2MR  M.sativa mRNA for ASET2                    32   0.48 
emb|X66469.1|MSMSK7  M.sativa mRNA msk7 for map kinase             32   0.48 

>gb|AF458700.1| Medicago sativa putative ankyrin-kinase (apk1) mRNA, complete cds
          Length = 1815

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 2   aattcggcacgaggctcga 20
           |||||||||||||||||||
Sbjct: 155 aattcggcacgaggctcga 173



>gb|CO513778.1|CO513778 s13dSG82C0600038_156218 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 572

 Score = 36.2 bits (18), Expect = 0.031
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 91  tagtgctggttttgtttc 108
           ||||||||||||||||||
Sbjct: 396 tagtgctggttttgtttc 413



>gb|CO512256.1|CO512256 s13dSG03G1200088_114026 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 615

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 402 aaaagaacaaatacag 417
           ||||||||||||||||
Sbjct: 374 aaaagaacaaatacag 359



>gb|CO514929.1|CO514929 s13dSG63B0800073_397363 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 485

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 93  gtgctggttttgtttc 108
           ||||||||||||||||
Sbjct: 384 gtgctggttttgtttc 399



>gb|CO515499.1|CO515499 s13dSG52C1200098_418057 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 224

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 402 aaaagaacaaatacag 417
           ||||||||||||||||
Sbjct: 200 aaaagaacaaatacag 185



>gb|CO517256.1|CO517256 s13dSG32F1000091_486108 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 646

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 93  gtgctggttttgtttc 108
           ||||||||||||||||
Sbjct: 613 gtgctggttttgtttc 598



>gb|L07042.1|ALFERKMAP Medicago sativa MAP kinase MsERK1 mRNA, complete cds
          Length = 1529

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 581 agatttgtgattttgg 596
           ||||||||||||||||
Sbjct: 688 agatttgtgattttgg 703



>emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2
          Length = 1193

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  gaattcggcacgaggc 16
          ||||||||||||||||
Sbjct: 52 gaattcggcacgaggc 67



>emb|X66469.1|MSMSK7 M.sativa mRNA msk7 for map kinase
          Length = 1512

 Score = 32.2 bits (16), Expect = 0.48
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 581 agatttgtgattttgg 596
           ||||||||||||||||
Sbjct: 686 agatttgtgattttgg 701



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1367
Number of Sequences: 7669
Number of extensions: 1367
Number of successful extensions: 446
Number of sequences better than  0.5: 9
Number of HSP's better than  0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 11
length of query: 675
length of database: 3,745,706
effective HSP length: 16
effective length of query: 659
effective length of database: 3,623,002
effective search space: 2387558318
effective search space used: 2387558318
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)