BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071103.2.1
(570 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U83591.1|MSU83591 Medicago sativa class I chitinase mRNA... 52 4e-007
gb|U83592.1|MSU83592 Medicago sativa class I chitinase mRNA... 52 4e-007
gb|AY804254.1| Medicago sativa chitinase (Chi) mRNA, comple... 52 4e-007
emb|AJ311050.1|MSA311050 Medicago sativa pr10.2 gene for cl... 32 0.40
>gb|U83591.1|MSU83591 Medicago sativa class I chitinase mRNA, complete cds
Length = 1259
Score = 52.0 bits (26), Expect = 4e-007
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||| ||||| || || |||||||||||||| || ||||| || || |||||||| |
Sbjct: 718 tcatccaaaaccatagagcggtcttgaaggatataacagggtcggtggctacgaggtctg 659
Query: 419 ggttgttgag 428
| ||||||||
Sbjct: 658 gattgttgag 649
>gb|U83592.1|MSU83592 Medicago sativa class I chitinase mRNA, complete cds
Length = 1267
Score = 52.0 bits (26), Expect = 4e-007
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||| ||||| || || |||||||||||||| || ||||| || || |||||||| |
Sbjct: 719 tcatccaaaaccatagagcggtcttgaaggatataacagggtcggtggctacgaggtctg 660
Query: 419 ggttgttgag 428
| ||||||||
Sbjct: 659 gattgttgag 650
>gb|AY804254.1| Medicago sativa chitinase (Chi) mRNA, complete cds
Length = 987
Score = 52.0 bits (26), Expect = 4e-007
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 359 tcatccagaaccacagcgctgtcttgaaggatatcacggggtccgtcgcgacgaggtccg 418
||||||| ||||| || || |||||||||||||| || ||||| || || |||||||| |
Sbjct: 688 tcatccaaaaccatagagcggtcttgaaggatataacagggtcggtggctacgaggtctg 629
Query: 419 ggttgttgag 428
| ||||||||
Sbjct: 628 gattgttgag 619
>emb|AJ311050.1|MSA311050 Medicago sativa pr10.2 gene for class 10 PR protein
Length = 2307
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 tttttacatgaaattt 23
||||||||||||||||
Sbjct: 508 tttttacatgaaattt 523
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 608
Number of Sequences: 7669
Number of extensions: 608
Number of successful extensions: 147
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 7
length of query: 570
length of database: 3,745,706
effective HSP length: 16
effective length of query: 554
effective length of database: 3,623,002
effective search space: 2007143108
effective search space used: 2007143108
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)