BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 56 6e-008
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 52 9e-007
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 50 4e-006
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 50 4e-006
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 50 4e-006
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 48 1e-005
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 48 1e-005
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 48 1e-005
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 48 1e-005
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 48 1e-005
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 48 1e-005
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 48 1e-005
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 46 6e-005
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 46 6e-005
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 46 6e-005
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 46 6e-005
gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted... 44 2e-004
gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted... 44 2e-004
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 44 2e-004
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 44 2e-004
gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted... 44 2e-004
gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted c... 44 2e-004
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 42 9e-004
gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA... 42 9e-004
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 42 9e-004
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 42 9e-004
gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted... 42 9e-004
gb|DQ122784.1| Medicago sativa clone C43 putative splicing ... 42 9e-004
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 40 0.003
gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x va... 40 0.003
gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x va... 40 0.003
gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDN... 38 0.014
gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted... 38 0.014
gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted... 36 0.054
gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted... 36 0.054
gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDN... 34 0.21
gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDN... 34 0.21
gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted... 34 0.21
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 34 0.21
gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted... 34 0.21
gb|CO513947.1|CO513947 s13dSG71E0500035_156556 Glandular tr... 34 0.21
gb|DR159667.1|DR159667 EST17 Medicago sativa cDNA-AFLP Medi... 34 0.21
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 56.0 bits (28), Expect = 6e-008
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1146 tgtcgtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||||||
Sbjct: 28 tgtcgtacctgcccgggcggccgctcga 1
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 52.0 bits (26), Expect = 9e-007
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1148 tcgtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||||
Sbjct: 249 tcgtacctgcccgggcggccgctcga 274
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 50.1 bits (25), Expect = 4e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 112 gtacctgcccgggcggccgctcgaa 88
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 50.1 bits (25), Expect = 4e-006
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 291 gtacctgcccgggcggccgctcgaa 315
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 50.1 bits (25), Expect = 4e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1149 cgtacctgcccgggcggccgctcga 1173
|||||||||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggccgctcga 1
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcga 264
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 370 gtacctgcccgggcggccgctcga 393
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 189 gtacctgcccgggcggccgctcga 212
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 6e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcg 1172
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 46.1 bits (23), Expect = 6e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcg 1172
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 46.1 bits (23), Expect = 6e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcg 1172
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 46.1 bits (23), Expect = 6e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcg 1172
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 252
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 231 acctgcccgggcggccgctcga 252
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 418
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 363 acctgcccgggcggccgctcga 384
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 309 acctgcccgggcggccgctcga 330
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1153 cctgcccgggcggccgctcgaa 1174
||||||||||||||||||||||
Sbjct: 312 cctgcccgggcggccgctcgaa 333
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 370
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctcga 1173
||||||||||||||||||||||
Sbjct: 349 acctgcccgggcggccgctcga 370
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 42.1 bits (21), Expect = 9e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcg 1172
|||||||||||||||||||||
Sbjct: 21 acctgcccgggcggccgctcg 1
>gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 9e-004
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||| ||||||||||
Sbjct: 261 gtacctgcccgggctgccgctcgaa 285
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 42.1 bits (21), Expect = 9e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1154 ctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||
Sbjct: 289 ctgcccgggcggccgctcgaa 309
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 42.1 bits (21), Expect = 9e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgct 1170
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 129
Score = 42.1 bits (21), Expect = 9e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgct 1170
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|DQ122784.1| Medicago sativa clone C43 putative splicing factor Prp8 mRNA, partial
cds
Length = 552
Score = 42.1 bits (21), Expect = 9e-004
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
||||||| |||||||||||||||||
Sbjct: 479 gtacctggccgggcggccgctcgaa 503
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctc 1171
||||||||||||||||||||
Sbjct: 322 acctgcccgggcggccgctc 341
>gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctc 1171
||||||||||||||||||||
Sbjct: 538 acctgcccgggcggccgctc 557
>gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
|||||||||||||||| |||||||
Sbjct: 507 gtacctgcccgggcgggcgctcga 530
>gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 223
Score = 38.2 bits (19), Expect = 0.014
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcg 1172
||||||| |||||||||||||||
Sbjct: 24 gtacctgtccgggcggccgctcg 2
>gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 275
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgct 1170
|||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgct 4
>gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 290
Score = 36.2 bits (18), Expect = 0.054
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctc 1171
|||||||||||||||| |||||
Sbjct: 268 gtacctgcccgggcgggcgctc 289
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 181
Score = 36.2 bits (18), Expect = 0.054
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcg 1172
||||||||||||| |||||||
Sbjct: 21 acctgcccgggcgnccgctcg 1
>gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 115
Score = 34.2 bits (17), Expect = 0.21
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgct 1170
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 110
Score = 34.2 bits (17), Expect = 0.21
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgct 1170
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 149
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1157 cccgggcggccgctcga 1173
|||||||||||||||||
Sbjct: 125 cccgggcggccgctcga 141
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 34.2 bits (17), Expect = 0.21
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggc-ggccgctcga 1173
|||||||||||||| ||||||||||
Sbjct: 25 gtacctgcccgggcgggccgctcga 1
>gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 198
Score = 34.2 bits (17), Expect = 0.21
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Plus
Query: 1150 gtacctgcccggg-cggccgctcga 1173
||||||||||||| |||||||||||
Sbjct: 174 gtacctgcccgggccggccgctcga 198
>gb|CO513947.1|CO513947 s13dSG71E0500035_156556 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 517
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 912 tctctgaaatcctcaac 928
|||||||||||||||||
Sbjct: 119 tctctgaaatcctcaac 135
>gb|DR159667.1|DR159667 EST17 Medicago sativa cDNA-AFLP Medicago sativa cDNA clone M25 5',
mRNA sequence
Length = 526
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 766 aaatgaaaaacctcagg 782
|||||||||||||||||
Sbjct: 248 aaatgaaaaacctcagg 264
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3215
Number of Sequences: 7669
Number of extensions: 3215
Number of successful extensions: 832
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 45
length of query: 1174
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1158
effective length of database: 3,623,002
effective search space: 4195436316
effective search space used: 4195436316
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)