BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514401.1|CO514401 s13dSG36B0500043_327462 Glandular tr... 40 0.001
gb|CO515001.1|CO515001 s13dSG26B0500045_397507 Glandular tr... 40 0.001
gb|CO512866.1|CO512866 s13dSG20F0700059_121658 Glandular tr... 38 0.005
emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetas... 38 0.005
gb|AJ410166.1|AJ410166 AJ410166 Medicago sativa library (Ka... 34 0.073
gb|CO513163.1|CO513163 s13dSG23F0200015_129490 Glandular tr... 34 0.073
>gb|CO514401.1|CO514401 s13dSG36B0500043_327462 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 82 caaaccaaaccaaaccaaac 101
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 82 caaaccaaaccaaaccaaa 100
>gb|CO515001.1|CO515001 s13dSG26B0500045_397507 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 473
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 82 caaaccaaaccaaaccaaac 101
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 caaaccaaaccaaaccaaa 38
|||||||||||||||||||
Sbjct: 82 caaaccaaaccaaaccaaa 100
>gb|CO512866.1|CO512866 s13dSG20F0700059_121658 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||| ||||
Sbjct: 195 aaaccaaaccaaaccaaatcaaa 217
>emb|X03931.1|MSGLNAG Medicago sativa L. glutamine synthetase gene
Length = 4464
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 18 accaaaccaaaccaaacca 36
|||||||||||||||||||
Sbjct: 1414 accaaaccaaaccaaacca 1432
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaacca 31
|||||||||||||||||
Sbjct: 1416 caaaccaaaccaaacca 1432
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 23 accaaaccaaaccaaa 38
||||||||||||||||
Sbjct: 1414 accaaaccaaaccaaa 1429
>gb|AJ410166.1|AJ410166 AJ410166 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U9, mRNA sequence
Length = 703
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 127 tgaccaccatgacctcc 143
|||||||||||||||||
Sbjct: 430 tgaccaccatgacctcc 414
>gb|CO513163.1|CO513163 s13dSG23F0200015_129490 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 571
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 186 gcagcaagtagagaaga 202
|||||||||||||||||
Sbjct: 43 gcagcaagtagagaaga 59
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 939
Number of Sequences: 7669
Number of extensions: 939
Number of successful extensions: 295
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 13
length of query: 412
length of database: 3,745,706
effective HSP length: 15
effective length of query: 397
effective length of database: 3,630,671
effective search space: 1441376387
effective search space used: 1441376387
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)