BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012915.2.2
(621 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2 34 0.11
gb|AW698853.1|AW698853 r501 non-glandular-haired subtracted... 32 0.44
gb|AJ410110.1|AJ410110 AJ410110 Medicago sativa library (Ka... 32 0.44
>emb|Z50800.1|MSASET2MR M.sativa mRNA for ASET2
Length = 1193
Score = 34.2 bits (17), Expect = 0.11
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2 tgcaggaattcggcaccaggc 22
|||||||||||||||| ||||
Sbjct: 47 tgcaggaattcggcacgaggc 67
>gb|AW698853.1|AW698853 r501 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 238
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 554 tacagctgcagccttt 569
||||||||||||||||
Sbjct: 98 tacagctgcagccttt 83
>gb|AJ410110.1|AJ410110 AJ410110 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U281, mRNA sequence
Length = 754
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2 tgcaggaattcggcac 17
||||||||||||||||
Sbjct: 38 tgcaggaattcggcac 53
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 622
Number of Sequences: 7669
Number of extensions: 622
Number of successful extensions: 220
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 3
length of query: 621
length of database: 3,745,706
effective HSP length: 16
effective length of query: 605
effective length of database: 3,623,002
effective search space: 2191916210
effective search space used: 2191916210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)