BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515111.1|CO515111 s13dSG40C1200098_399087 Glandular tr... 44 6e-004
gb|CO517036.1|CO517036 s13dSG31D1000080_468618 Glandular tr... 44 6e-004
>gb|CO515111.1|CO515111 s13dSG40C1200098_399087 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 169
Score = 44.1 bits (22), Expect = 6e-004
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2728 atgttttctcggtcctcctccccagacatc 2757
|||||||||||||| ||||| |||||||||
Sbjct: 125 atgttttctcggtcatcctctccagacatc 96
>gb|CO517036.1|CO517036 s13dSG31D1000080_468618 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 556
Score = 44.1 bits (22), Expect = 6e-004
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 2728 atgttttctcggtcctcctccccagacatc 2757
|||||||||||||| ||||| |||||||||
Sbjct: 143 atgttttctcggtcatcctctccagacatc 114
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7170
Number of Sequences: 7669
Number of extensions: 7170
Number of successful extensions: 2087
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2085
Number of HSP's gapped (non-prelim): 2
length of query: 3330
length of database: 3,745,706
effective HSP length: 17
effective length of query: 3313
effective length of database: 3,615,333
effective search space: 11977598229
effective search space used: 11977598229
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)