BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950225.2.1
         (3330 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO515111.1|CO515111  s13dSG40C1200098_399087 Glandular tr...    44   6e-004
gb|CO517036.1|CO517036  s13dSG31D1000080_468618 Glandular tr...    44   6e-004
>gb|CO515111.1|CO515111 s13dSG40C1200098_399087 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 169

 Score = 44.1 bits (22), Expect = 6e-004
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 2728 atgttttctcggtcctcctccccagacatc 2757
            |||||||||||||| ||||| |||||||||
Sbjct: 125  atgttttctcggtcatcctctccagacatc 96
>gb|CO517036.1|CO517036 s13dSG31D1000080_468618 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 556

 Score = 44.1 bits (22), Expect = 6e-004
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 2728 atgttttctcggtcctcctccccagacatc 2757
            |||||||||||||| ||||| |||||||||
Sbjct: 143  atgttttctcggtcatcctctccagacatc 114
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7170
Number of Sequences: 7669
Number of extensions: 7170
Number of successful extensions: 2087
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2085
Number of HSP's gapped (non-prelim): 2
length of query: 3330
length of database: 3,745,706
effective HSP length: 17
effective length of query: 3313
effective length of database: 3,615,333
effective search space: 11977598229
effective search space used: 11977598229
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)