BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512923.1|CO512923 s13dSG86D0600046_121772 Glandular tr... 38 0.031
gb|CO512995.1|CO512995 s13dSG09D0100010_121916 Glandular tr... 36 0.12
gb|CO514552.1|CO514552 s13dSG42B0100013_327764 Glandular tr... 36 0.12
gb|CO517253.1|CO517253 s13dSG32F0600059_486102 Glandular tr... 36 0.12
gb|CO517331.1|CO517331 s13dSG45H0400044_486258 Glandular tr... 36 0.12
gb|DQ073092.1| Medicago sativa clone Agat013 SSR marker seq... 36 0.12
gb|CO515414.1|CO515414 s13dSG50C0500038_417887 Glandular tr... 34 0.48
gb|CO515424.1|CO515424 s13dSG50D1000090_417907 Glandular tr... 34 0.48
gb|CO515515.1|CO515515 s13dSG52E1100087_418089 Glandular tr... 34 0.48
gb|CO516253.1|CO516253 s13dSG69C0400022_445834 Glandular tr... 34 0.48
gb|CO516588.1|CO516588 s13dSG57H1000090_446504 Glandular tr... 34 0.48
gb|CO517157.1|CO517157 s13dSG33C0600050_474398 Glandular tr... 34 0.48
gb|AY881631.1| Medicago sativa SSR marker Agat006 genomic s... 34 0.48
gb|AY912108.1| Medicago satvia SSR marker Agat005 sequence 34 0.48
>gb|CO512923.1|CO512923 s13dSG86D0600046_121772 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.031
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1362 tgaaaaatcatcatcatcatcaa 1384
|||||| ||||||||||||||||
Sbjct: 91 tgaaaattcatcatcatcatcaa 113
>gb|CO512995.1|CO512995 s13dSG09D0100010_121916 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1366 aaatcatcatcatcatca 1383
||||||||||||||||||
Sbjct: 178 aaatcatcatcatcatca 195
>gb|CO514552.1|CO514552 s13dSG42B0100013_327764 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 621
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1368 atcatcatcatcatcaaa 1385
||||||||||||||||||
Sbjct: 89 atcatcatcatcatcaaa 106
>gb|CO517253.1|CO517253 s13dSG32F0600059_486102 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 643
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1367 aatcatcatcatcatcaa 1384
||||||||||||||||||
Sbjct: 256 aatcatcatcatcatcaa 273
>gb|CO517331.1|CO517331 s13dSG45H0400044_486258 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 621
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1367 aatcatcatcatcatcaa 1384
||||||||||||||||||
Sbjct: 250 aatcatcatcatcatcaa 267
>gb|DQ073092.1| Medicago sativa clone Agat013 SSR marker sequence
Length = 490
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1368 atcatcatcatcatcaaa 1385
||||||||||||||||||
Sbjct: 133 atcatcatcatcatcaaa 116
>gb|CO515414.1|CO515414 s13dSG50C0500038_417887 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 440
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 611 gcagctggggtgttgcc 627
|||||||||||||||||
Sbjct: 120 gcagctggggtgttgcc 104
>gb|CO515424.1|CO515424 s13dSG50D1000090_417907 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 419
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1367 aatcatcatcatcatca 1383
|||||||||||||||||
Sbjct: 52 aatcatcatcatcatca 68
>gb|CO515515.1|CO515515 s13dSG52E1100087_418089 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1504 gaagggaaggaagtgaa 1520
|||||||||||||||||
Sbjct: 383 gaagggaaggaagtgaa 399
>gb|CO516253.1|CO516253 s13dSG69C0400022_445834 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 457
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 288 tcttcctcttgtgtgat 304
|||||||||||||||||
Sbjct: 22 tcttcctcttgtgtgat 6
>gb|CO516588.1|CO516588 s13dSG57H1000090_446504 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1670 ttgatgaaccatcatca 1686
|||||||||||||||||
Sbjct: 531 ttgatgaaccatcatca 515
>gb|CO517157.1|CO517157 s13dSG33C0600050_474398 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 617
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1368 atcatcatcatcatcaa 1384
|||||||||||||||||
Sbjct: 242 atcatcatcatcatcaa 258
>gb|AY881631.1| Medicago sativa SSR marker Agat006 genomic sequence
Length = 428
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1367 aatcatcatcatcatca 1383
|||||||||||||||||
Sbjct: 375 aatcatcatcatcatca 359
>gb|AY912108.1| Medicago satvia SSR marker Agat005 sequence
Length = 418
Score = 34.2 bits (17), Expect = 0.48
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1367 aatcatcatcatcatca 1383
|||||||||||||||||
Sbjct: 77 aatcatcatcatcatca 61
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7974
Number of Sequences: 7669
Number of extensions: 7974
Number of successful extensions: 2072
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 32
length of query: 2639
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2622
effective length of database: 3,615,333
effective search space: 9479403126
effective search space used: 9479403126
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)