BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ306690.1|MSA306690 Medicago sativa prx2 gene for pero... 40 0.002
gb|CO512491.1|CO512491 s13dSG100F080006_114496 Glandular tr... 36 0.030
gb|CO513361.1|CO513361 s13dSG38B0300025_129886 Glandular tr... 32 0.46
gb|CO516402.1|CO516402 s13dSG27C0700052_446132 Glandular tr... 32 0.46
>emb|AJ306690.1|MSA306690 Medicago sativa prx2 gene for peroxidase2, exons 1-4
Length = 5090
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 552 tataaactattttcaagttt 571
||||||||||||||||||||
Sbjct: 2736 tataaactattttcaagttt 2717
>gb|CO512491.1|CO512491 s13dSG100F080006_114496 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 36.2 bits (18), Expect = 0.030
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 335 atcaaatccagcatcctcaagc 356
|||||||||||||| |||||||
Sbjct: 329 atcaaatccagcattctcaagc 308
>gb|CO513361.1|CO513361 s13dSG38B0300025_129886 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 396 caaatccaaatcacaa 411
||||||||||||||||
Sbjct: 129 caaatccaaatcacaa 144
>gb|CO516402.1|CO516402 s13dSG27C0700052_446132 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 396 caaatccaaatcacaa 411
||||||||||||||||
Sbjct: 129 caaatccaaatcacaa 144
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1128
Number of Sequences: 7669
Number of extensions: 1128
Number of successful extensions: 357
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 6
length of query: 649
length of database: 3,745,706
effective HSP length: 16
effective length of query: 633
effective length of database: 3,623,002
effective search space: 2293360266
effective search space used: 2293360266
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)