BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512173.1|CO512173 s13dSG34H0100012_108666 Glandular tr... 34 0.15
gb|U41472.1|MSU41472 Medicago sativa pectate lyase homolog ... 34 0.15
>gb|CO512173.1|CO512173 s13dSG34H0100012_108666 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 34.2 bits (17), Expect = 0.15
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 28 tgagcagtgaattggtcccac 48
||||| |||||||||||||||
Sbjct: 85 tgagctgtgaattggtcccac 65
>gb|U41472.1|MSU41472 Medicago sativa pectate lyase homolog gene, complete cds
Length = 3824
Score = 34.2 bits (17), Expect = 0.15
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 657 caagaccatcgacggacgcggcgccaacgtgca 689
||||||||||||||| || || ||||| |||||
Sbjct: 2401 caagaccatcgacggtcgtggagccaatgtgca 2433
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1129
Number of Sequences: 7669
Number of extensions: 1129
Number of successful extensions: 357
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 2
length of query: 819
length of database: 3,745,706
effective HSP length: 16
effective length of query: 803
effective length of database: 3,623,002
effective search space: 2909270606
effective search space used: 2909270606
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)