BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513436.1|CO513436 s13dSG10B0700057_130036 Glandular tr... 34 0.20
gb|CO514944.1|CO514944 s13dSG63C1200098_397393 Glandular tr... 34 0.20
gb|CO515431.1|CO515431 s13dSG50E0700055_417921 Glandular tr... 34 0.20
gb|CO515870.1|CO515870 s13dSG91A1100083_421279 Glandular tr... 34 0.20
gb|CO516816.1|CO516816 s13dSG98A0900067_446960 Glandular tr... 34 0.20
>gb|CO513436.1|CO513436 s13dSG10B0700057_130036 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 30 ctgcacttgcaaggcca 46
|||||||||||||||||
Sbjct: 87 ctgcacttgcaaggcca 71
>gb|CO514944.1|CO514944 s13dSG63C1200098_397393 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 456
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 411 gcatgcatcttggtgtt 427
|||||||||||||||||
Sbjct: 249 gcatgcatcttggtgtt 233
>gb|CO515431.1|CO515431 s13dSG50E0700055_417921 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 411 gcatgcatcttggtgtt 427
|||||||||||||||||
Sbjct: 342 gcatgcatcttggtgtt 326
>gb|CO515870.1|CO515870 s13dSG91A1100083_421279 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 391
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 411 gcatgcatcttggtgtt 427
|||||||||||||||||
Sbjct: 333 gcatgcatcttggtgtt 317
>gb|CO516816.1|CO516816 s13dSG98A0900067_446960 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 555
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 411 gcatgcatcttggtgtt 427
|||||||||||||||||
Sbjct: 342 gcatgcatcttggtgtt 326
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2865
Number of Sequences: 7669
Number of extensions: 2865
Number of successful extensions: 655
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 5
length of query: 1126
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1110
effective length of database: 3,623,002
effective search space: 4021532220
effective search space used: 4021532220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)