BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 52 1e-006
gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted... 52 1e-006
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 50 5e-006
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 48 2e-005
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 48 2e-005
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 48 2e-005
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 48 2e-005
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 48 2e-005
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 48 2e-005
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 48 2e-005
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 48 2e-005
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 48 2e-005
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 48 2e-005
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 48 2e-005
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 46 8e-005
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 46 8e-005
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 46 8e-005
gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA... 44 3e-004
gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted... 44 3e-004
gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted... 44 3e-004
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 44 3e-004
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 44 3e-004
gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted... 44 3e-004
gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted c... 44 3e-004
gb|DQ122784.1| Medicago sativa clone C43 putative splicing ... 44 3e-004
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 42 0.001
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 42 0.001
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 42 0.001
gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted... 42 0.001
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 40 0.005
gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x va... 40 0.005
gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x va... 40 0.005
gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDN... 38 0.019
gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted... 38 0.019
gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted... 38 0.019
gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted... 36 0.074
gb|AW698355.1|AW698355 g43 glandular-haired subtracted cDNA... 34 0.29
gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDN... 34 0.29
gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDN... 34 0.29
gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted... 34 0.29
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 34 0.29
gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular tr... 34 0.29
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 52.0 bits (26), Expect = 1e-006
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||||||
Sbjct: 290 agtacctgcccgggcggccgctcgaa 315
>gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 198
Score = 52.0 bits (26), Expect = 1e-006
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 1566 gtttttggagtacctgcccggg-cggccgctcga 1598
|||||||||||||||||||||| |||||||||||
Sbjct: 165 gtttttggagtacctgcccgggccggccgctcga 198
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 50.1 bits (25), Expect = 5e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 112 gtacctgcccgggcggccgctcgaa 88
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcga 264
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 251 gtacctgcccgggcggccgctcga 274
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1574 agtacctgcccgggcggccgctcg 1597
||||||||||||||||||||||||
Sbjct: 24 agtacctgcccgggcggccgctcg 1
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 370 gtacctgcccgggcggccgctcga 393
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 48.1 bits (24), Expect = 2e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
||||||||||||||||||||||||
Sbjct: 189 gtacctgcccgggcggccgctcga 212
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 46.1 bits (23), Expect = 8e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcg 1597
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 46.1 bits (23), Expect = 8e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcg 1597
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 46.1 bits (23), Expect = 8e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcg 1597
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 307
Score = 44.1 bits (22), Expect = 3e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
||||||||||||||| ||||||||||
Sbjct: 260 agtacctgcccgggctgccgctcgaa 285
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 252
Score = 44.1 bits (22), Expect = 3e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 231 acctgcccgggcggccgctcga 252
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 418
Score = 44.1 bits (22), Expect = 3e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 44.1 bits (22), Expect = 3e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 363 acctgcccgggcggccgctcga 384
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 44.1 bits (22), Expect = 3e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 309 acctgcccgggcggccgctcga 330
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 3e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1578 cctgcccgggcggccgctcgaa 1599
||||||||||||||||||||||
Sbjct: 312 cctgcccgggcggccgctcgaa 333
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 370
Score = 44.1 bits (22), Expect = 3e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctcga 1598
||||||||||||||||||||||
Sbjct: 349 acctgcccgggcggccgctcga 370
>gb|DQ122784.1| Medicago sativa clone C43 putative splicing factor Prp8 mRNA, partial
cds
Length = 552
Score = 44.1 bits (22), Expect = 3e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctcgaa 1599
|||||||| |||||||||||||||||
Sbjct: 478 agtacctggccgggcggccgctcgaa 503
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcg 1597
|||||||||||||||||||||
Sbjct: 21 acctgcccgggcggccgctcg 1
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1579 ctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||
Sbjct: 289 ctgcccgggcggccgctcgaa 309
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgct 1595
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 129
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgct 1595
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctc 1596
||||||||||||||||||||
Sbjct: 322 acctgcccgggcggccgctc 341
>gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctc 1596
||||||||||||||||||||
Sbjct: 538 acctgcccgggcggccgctc 557
>gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.005
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcga 1598
|||||||||||||||| |||||||
Sbjct: 507 gtacctgcccgggcgggcgctcga 530
>gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 223
Score = 38.2 bits (19), Expect = 0.019
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcg 1597
||||||| |||||||||||||||
Sbjct: 24 gtacctgtccgggcggccgctcg 2
>gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 290
Score = 38.2 bits (19), Expect = 0.019
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcggccgctc 1596
||||||||||||||||| |||||
Sbjct: 267 agtacctgcccgggcgggcgctc 289
>gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 275
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgct 1595
|||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgct 4
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 181
Score = 36.2 bits (18), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1577 acctgcccgggcggccgctcg 1597
||||||||||||| |||||||
Sbjct: 21 acctgcccgggcgnccgctcg 1
>gb|AW698355.1|AW698355 g43 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 168
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1574 agtacctgcccgggcgg 1590
|||||||||||||||||
Sbjct: 152 agtacctgcccgggcgg 168
>gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 115
Score = 34.2 bits (17), Expect = 0.29
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgct 1595
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 110
Score = 34.2 bits (17), Expect = 0.29
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgct 1595
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 149
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1582 cccgggcggccgctcga 1598
|||||||||||||||||
Sbjct: 125 cccgggcggccgctcga 141
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 34.2 bits (17), Expect = 0.29
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggc-ggccgctcga 1598
|||||||||||||| ||||||||||
Sbjct: 25 gtacctgcccgggcgggccgctcga 1
>gb|CO512186.1|CO512186 s13dSG03A0800053_113886 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 34.2 bits (17), Expect = 0.29
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 780 tcacatgctacaacaacaaag 800
||||||| |||||||||||||
Sbjct: 574 tcacatgatacaacaacaaag 554
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3349
Number of Sequences: 7669
Number of extensions: 3349
Number of successful extensions: 907
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 44
length of query: 1599
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1583
effective length of database: 3,623,002
effective search space: 5735212166
effective search space used: 5735212166
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)