BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647494.2.1
(730 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDN... 190 9e-049
gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDN... 182 2e-046
gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted... 36 0.033
gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular tr... 36 0.033
gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular tr... 36 0.033
gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular tr... 36 0.033
gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular tr... 36 0.033
gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular tr... 36 0.033
gb|AJ410088.1|AJ410088 AJ410088 Medicago sativa library (Ka... 34 0.13
gb|CO511830.1|CO511830 s13dSG02E0400035_103560 Glandular tr... 34 0.13
gb|CO515876.1|CO515876 s13dSG91B0900075_421291 Glandular tr... 34 0.13
>gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 344
Score = 190 bits (96), Expect = 9e-049
Identities = 183/212 (86%)
Strand = Plus / Plus
Query: 379 atctgaagagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttg 438
|||||||| || |||||||| || || || ||||| || || |||||||| |||||||||
Sbjct: 10 atctgaagggcaggactccacttatctttcagaatatcaagacatatcctgccaagcttg 69
Query: 439 tcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatat 498
||||| |||||||| || |||||||| | |||||||| ||||| |||||||||||||||
Sbjct: 70 tcaatgttaggatgatatatttttgtcaagaatctaacctttggagcagccattggatat 129
Query: 499 tcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcgggg 558
|| |||||||| |||||||| |||||||||||||| |||||||| || ||||| | |||
Sbjct: 130 tcttcaggcaaaaatagttctagcttgaaaactcccccttcataaggagactgagttggg 189
Query: 559 ccaaggatcatgacattgaagtaccgcatatt 590
||||||||||| |||||||| |||||||||||
Sbjct: 190 ccaaggatcatcacattgaaataccgcatatt 221
>gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 345
Score = 182 bits (92), Expect = 2e-046
Identities = 235/283 (83%)
Strand = Plus / Plus
Query: 379 atctgaagagctggactccatttgtccttaagaatgtcgaggcatatcctaccaagcttg 438
|||||||| || |||||||| || || || ||||| || || |||||||| |||||||||
Sbjct: 10 atctgaagggcgggactccacttatctttcagaatatcaagacatatcctgccaagcttg 69
Query: 439 tcaatattaggatggtaaatttttgtgagaaatctaacttttggggcagccattggatat 498
||||| |||||||| || |||||||| | || || || ||||| |||||||||||||||
Sbjct: 70 tcaatgttaggatgatatatttttgtcaagaacctgacctttggagcagccattggatat 129
Query: 499 tcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtgactgcgcgggg 558
|| |||||||| ||||| || |||||||||||||| |||||||| || ||||| | |||
Sbjct: 130 tcttcaggcaaaaataggtctagcttgaaaactcccccttcataaggagactgagttggg 189
Query: 559 ccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacgcgctaatcccc 618
||||||||||| |||||||| ||||||||||| || ||||| || || || ||||| ||
Sbjct: 190 ccaaggatcatcacattgaaataccgcatattgtcttccgaaggggatgcactaattcca 249
Query: 619 ggtgctggttcgctgagaagccgctgcgtctccttgatgattc 661
|| ||||| || ||||| | ||||| || |||||||||||||
Sbjct: 250 ggcgctggctcactgagcanacgctgtgtttccttgatgattc 292
>gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 335
Score = 36.2 bits (18), Expect = 0.033
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 394 ctccatttgtccttaagaatgtcgag 419
||||||| |||||||||||||||||
Sbjct: 98 ctccattgttccttaagaatgtcgag 123
>gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 36.2 bits (18), Expect = 0.033
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 394 ctccatttgtccttaagaatgtcgag 419
||||||| |||||||||||||||||
Sbjct: 478 ctccattgttccttaagaatgtcgag 453
>gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 36.2 bits (18), Expect = 0.033
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 321 aggatcatctgggtttgg 338
||||||||||||||||||
Sbjct: 438 aggatcatctgggtttgg 421
>gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 490
Score = 36.2 bits (18), Expect = 0.033
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 394 ctccatttgtccttaagaatgtcgag 419
||||||| |||||||||||||||||
Sbjct: 380 ctccattgttccttaagaatgtcgag 355
>gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 36.2 bits (18), Expect = 0.033
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 394 ctccatttgtccttaagaatgtcgag 419
||||||| |||||||||||||||||
Sbjct: 354 ctccattgttccttaagaatgtcgag 329
>gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 418
Score = 36.2 bits (18), Expect = 0.033
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 394 ctccatttgtccttaagaatgtcgag 419
||||||| |||||||||||||||||
Sbjct: 355 ctccattgttccttaagaatgtcgag 330
>gb|AJ410088.1|AJ410088 AJ410088 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone L482, mRNA sequence
Length = 320
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 319 agaggatcatctgggtt 335
|||||||||||||||||
Sbjct: 27 agaggatcatctgggtt 11
>gb|CO511830.1|CO511830 s13dSG02E0400035_103560 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 319 agaggatcatctgggtt 335
|||||||||||||||||
Sbjct: 449 agaggatcatctgggtt 433
>gb|CO515876.1|CO515876 s13dSG91B0900075_421291 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 322 ggatcatctgggtttgg 338
|||||||||||||||||
Sbjct: 445 ggatcatctgggtttgg 429
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1200
Number of Sequences: 7669
Number of extensions: 1200
Number of successful extensions: 312
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 13
length of query: 730
length of database: 3,745,706
effective HSP length: 16
effective length of query: 714
effective length of database: 3,623,002
effective search space: 2586823428
effective search space used: 2586823428
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)