BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594405.2.1
(637 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410108.1|AJ410108 AJ410108 Medicago sativa library (Ka... 32 0.45
gb|CO511748.1|CO511748 s13dSG01F0400043_103396 Glandular tr... 32 0.45
>gb|AJ410108.1|AJ410108 AJ410108 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U246, mRNA sequence
Length = 741
Score = 32.2 bits (16), Expect = 0.45
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 167 tgaaccgggctatccttgt 185
|||||| ||||||||||||
Sbjct: 605 tgaaccnggctatccttgt 623
>gb|CO511748.1|CO511748 s13dSG01F0400043_103396 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 109 gctaaaatacaggaca 124
||||||||||||||||
Sbjct: 333 gctaaaatacaggaca 348
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1049
Number of Sequences: 7669
Number of extensions: 1049
Number of successful extensions: 227
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 2
length of query: 637
length of database: 3,745,706
effective HSP length: 16
effective length of query: 621
effective length of database: 3,623,002
effective search space: 2249884242
effective search space used: 2249884242
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)