BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550113.2.1
(803 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514508.1|CO514508 s13dSG43E0900069_327676 Glandular tr... 80 3e-015
gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted... 46 4e-005
gb|AW698894.1|AW698894 r167 non-glandular-haired subtracted... 46 4e-005
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 42 6e-004
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 38 0.009
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 38 0.009
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 38 0.009
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 36 0.037
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 36 0.037
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 36 0.037
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 36 0.037
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 36 0.037
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 36 0.037
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 36 0.037
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 36 0.037
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 36 0.037
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 36 0.037
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 36 0.037
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 36 0.037
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 36 0.037
gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted... 36 0.037
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 36 0.037
gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted... 34 0.15
gb|AF020273.1|AF020273 Medicago sativa nodule-enhanced mala... 34 0.15
gb|AF461198.1| Medicago sativa nodule-enhanced malate dehyd... 34 0.15
>gb|CO514508.1|CO514508 s13dSG43E0900069_327676 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 79.8 bits (40), Expect = 3e-015
Identities = 202/256 (78%)
Strand = Plus / Minus
Query: 378 accttcttgacaatcttctgctcttcaaccaggaaagcacggatgatcctttctctaact 437
||||| || |||||||| ||||||||||||| |||||| | ||||||||||| | |||
Sbjct: 384 acctttttcacaatcttttgctcttcaaccaagaaagccctaatgatcctttcccgaaca 325
Query: 438 gcagttccagatagtactcccccatagggacggttcacagttctgcggttcctagacaac 497
||| |||||| | ||||| ||||| | |||||||||||| || ||||| |||| ||||
Sbjct: 324 gcacctccagacaaaactccgccataagcacggttcacagtcctacggtttctaggcaac 265
Query: 498 ctggaccttttgtactcagctggcctcagatggggaatgccctggatcttcttcccggtc 557
|| || || |||||||| | ||||||| || ||||| || || || |||| || ||
Sbjct: 264 cttgatctcttgtactctgtaggcctcaagtgtggaattccttgaattctcttgccagta 205
Query: 558 acgggacacttgggcccgctggctctcttcttggtgtactggtacacgagcttgccacca 617
|| || ||||| || ||||| ||||||||||| || ||| || || ||||| ||||||
Sbjct: 204 acagggcacttaggtccgctagctctcttcttagtagtctgataaacaagcttaccacca 145
Query: 618 ggggtcttgacgaccc 633
||||| ||||| ||||
Sbjct: 144 ggggttttgacaaccc 129
>gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 780 acctgcccgggcggcccgctcga 802
|||||||||||||||||||||||
Sbjct: 455 acctgcccgggcggcccgctcga 477
>gb|AW698894.1|AW698894 r167 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 262
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 780 acctgcccgggcggcccgctcga 802
|||||||||||||||||||||||
Sbjct: 23 acctgcccgggcggcccgctcga 1
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 42.1 bits (21), Expect = 6e-004
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcccgctcga 802
|||||||||||||||| ||||||||
Sbjct: 25 gtacctgcccgggcgggccgctcga 1
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 777 cgtacctgcccgggcggcc 795
|||||||||||||||||||
Sbjct: 250 cgtacctgcccgggcggcc 268
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 777 cgtacctgcccgggcggcc 795
|||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggcc 7
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 777 cgtacctgcccgggcggcc 795
|||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggcc 7
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggcc 258
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggcc 7
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 112 gtacctgcccgggcggcc 95
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 291 gtacctgcccgggcggcc 308
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggcc 6
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggcc 7
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggcc 7
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggcc 7
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 370 gtacctgcccgggcggcc 387
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggcc 6
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggcc 7
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggcc 6
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggcc 6
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 129
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggcc 7
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 36.2 bits (18), Expect = 0.037
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 778 gtacctgcccgggcggcc 795
||||||||||||||||||
Sbjct: 189 gtacctgcccgggcggcc 206
>gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 198
Score = 34.2 bits (17), Expect = 0.15
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 778 gtacctgcccgggcggcccgctcga 802
|||||||||||||| | ||||||||
Sbjct: 174 gtacctgcccgggccggccgctcga 198
>gb|AF020273.1|AF020273 Medicago sativa nodule-enhanced malate dehydrogenase precursor
(nemdh) mRNA, complete cds
Length = 1645
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 368 taatttcaacaccttct 384
|||||||||||||||||
Sbjct: 137 taatttcaacaccttct 153
>gb|AF461198.1| Medicago sativa nodule-enhanced malate dehydrogenase gene, exons 1
and 2 and partial cds
Length = 3437
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 368 taatttcaacaccttct 384
|||||||||||||||||
Sbjct: 3140 taatttcaacaccttct 3156
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1830
Number of Sequences: 7669
Number of extensions: 1830
Number of successful extensions: 555
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 27
length of query: 803
length of database: 3,745,706
effective HSP length: 16
effective length of query: 787
effective length of database: 3,623,002
effective search space: 2851302574
effective search space used: 2851302574
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)