BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493976.2.1
(1294 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511840.1|CO511840 s13dSG02F0200027_103580 Glandular tr... 34 0.24
gb|CO512689.1|CO512689 s13dSG19E0100003_121304 Glandular tr... 34 0.24
gb|CO513376.1|CO513376 s13dSG38C1100082_129916 Glandular tr... 34 0.24
gb|CO516371.1|CO516371 s13dSG99H0700062_446070 Glandular tr... 34 0.24
>gb|CO511840.1|CO511840 s13dSG02F0200027_103580 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 622 caacctggtactggtga 638
|||||||||||||||||
Sbjct: 80 caacctggtactggtga 64
>gb|CO512689.1|CO512689 s13dSG19E0100003_121304 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 622 caacctggtactggtga 638
|||||||||||||||||
Sbjct: 31 caacctggtactggtga 15
>gb|CO513376.1|CO513376 s13dSG38C1100082_129916 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 525
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 622 caacctggtactggtga 638
|||||||||||||||||
Sbjct: 94 caacctggtactggtga 78
>gb|CO516371.1|CO516371 s13dSG99H0700062_446070 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 441
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 622 caacctggtactggtga 638
|||||||||||||||||
Sbjct: 80 caacctggtactggtga 64
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1421
Number of Sequences: 7669
Number of extensions: 1421
Number of successful extensions: 323
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 4
length of query: 1294
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1278
effective length of database: 3,623,002
effective search space: 4630196556
effective search space used: 4630196556
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)