BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478398.2.5
(1385 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512343.1|CO512343 s13dSG68H0100012_114200 Glandular tr... 34 0.25
gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA... 34 0.25
emb|AX774637.1| Sequence 2 from Patent WO03035856 34 0.25
>gb|CO512343.1|CO512343 s13dSG68H0100012_114200 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 406
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1275 aaaataacaacccttca 1291
|||||||||||||||||
Sbjct: 268 aaaataacaacccttca 252
>gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA, complete cds
Length = 1850
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1257 ttatttatggctttgca 1273
|||||||||||||||||
Sbjct: 1572 ttatttatggctttgca 1588
>emb|AX774637.1| Sequence 2 from Patent WO03035856
Length = 1866
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1257 ttatttatggctttgca 1273
|||||||||||||||||
Sbjct: 1572 ttatttatggctttgca 1588
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2380
Number of Sequences: 7669
Number of extensions: 2380
Number of successful extensions: 760
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 3
length of query: 1385
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1369
effective length of database: 3,623,002
effective search space: 4959889738
effective search space used: 4959889738
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)