BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448339.2.1
(931 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular tr... 244 9e-065
gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular tr... 228 6e-060
gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular tr... 198 5e-051
gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular tr... 178 5e-045
gb|CO511830.1|CO511830 s13dSG02E0400035_103560 Glandular tr... 174 7e-044
gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular tr... 172 3e-043
gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular tr... 151 1e-036
gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted... 127 2e-029
gb|CO513129.1|CO513129 s13dSG23C0100002_129422 Glandular tr... 121 9e-028
gb|CO515876.1|CO515876 s13dSG91B0900075_421291 Glandular tr... 90 3e-018
gb|AJ410088.1|AJ410088 AJ410088 Medicago sativa library (Ka... 80 3e-015
gb|CO517161.1|CO517161 s13dSG33C1100086_474406 Glandular tr... 62 7e-010
>gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 244 bits (123), Expect = 9e-065
Identities = 363/443 (81%)
Strand = Plus / Plus
Query: 140 atggcgtcgaagaggatcctgaaggagttgaaggacctgcagaaggacccgcccacctcc 199
||||| ||||| ||||||| |||||| | ||||| |||||||||| || || || ||
Sbjct: 74 atggcatcgaaacggatcctcaaggagctcaaggatttgcagaaggatccaccaacatca 133
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
||||| ||||||||||| | |||||||||||| ||||||||||| || |||||||| |||
Sbjct: 134 tgcagtgcaggtcctgtggctgaggacatgtttcattggcaagcaacaatcatgggacct 193
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||| | ||| ||||| || || ||||| ||||| || || ||||||||
Sbjct: 194 gctgatagcccctatgctggtggtgtgtttttggtttcaattcattttcctccggattat 253
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| ||||||||||||||||| | || | || ||||| |||||||| ||||||||||||
Sbjct: 254 ccattcaagccaccaaaggttgcatttaggactaaggtattccacccaaacatcaacagc 313
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| || || ||||| || ||||||||||||||||| ||||||||||| | || || ||
Sbjct: 314 aatggaagtatttgtctcgacattcttaaggaacaatggagccctgcactgaccatttcc 373
Query: 440 aaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtc 499
||||| || |||||||||||||| || | ||||| || || || |||||||| |||||
Sbjct: 374 aaggtgcttttgtcaatctgctcattggtgacggatcccaatcccgatgatccgcttgtg 433
Query: 500 cctgagattgctcacatgtacaagaccgacagggccaagtatgagtccaccgcacgctcc 559
||||| ||||| || ||||||||||| |||||| |||||||||| ||||||||||| |
Sbjct: 434 cctgaaattgcacatatgtacaagactgacaggaccaagtatgaagccaccgcacgcagc 493
Query: 560 tggacacagaagtatgccatggg 582
|||||||||||||||||||||||
Sbjct: 494 tggacacagaagtatgccatggg 516
>gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 228 bits (115), Expect = 6e-060
Identities = 361/443 (81%)
Strand = Plus / Plus
Query: 140 atggcgtcgaagaggatcctgaaggagttgaaggacctgcagaaggacccgcccacctcc 199
||||||||||| | ||| |||||||| | ||||| ||||||||||||| || || ||
Sbjct: 85 atggcgtcgaaacgaatcttgaaggagctcaaggatttgcagaaggaccccccaacttca 144
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
||||| ||||||||||| | ||||||||||||||| |||||||| || |||||||| ||
Sbjct: 145 tgcagtgcaggtcctgtggctgaggacatgttccactggcaagccacaatcatgggaccg 204
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||||| | | ||||| || ||| |||| ||||| || || || || ||
Sbjct: 205 gctgatagcccatatactggtggtgtgttcctggtttcaattcattttcctcctgactat 264
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| |||||||||||||||| |||| | |||||||| |||||||| |||||||||||
Sbjct: 265 cccttcaagccaccaaagggtgcttttaggaccaaggtgttccacccaaacatcaacagt 324
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| ||||| || || || |||||||| ||||||||||||||||| || ||||| || ||
Sbjct: 325 aatggcagtatatgtctcgacattctgaaggaacagtggagcccagcattaaccatttcc 384
Query: 440 aaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtc 499
|||| || ||||||| ||||| || | |||||||| ||||| |||||||| |||||
Sbjct: 385 aagggccttttgtcaatttgctcgttgttgacggaccccaaccccgatgatccacttgtt 444
Query: 500 cctgagattgctcacatgtacaagaccgacagggccaagtatgagtccaccgcacgctcc 559
||||| ||||| |||||||||||||||||||||||||| ||||| |||| || ||| |
Sbjct: 445 cctgaaattgcacacatgtacaagaccgacagggccaaatatgaagccacagctcgcagc 504
Query: 560 tggacacagaagtatgccatggg 582
|||||||||||||||||||||||
Sbjct: 505 tggacacagaagtatgccatggg 527
>gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 198 bits (100), Expect = 5e-051
Identities = 313/384 (81%)
Strand = Plus / Plus
Query: 161 aaggagttgaaggacctgcagaaggacccgcccacctcctgcagcgcaggtcctgttggt 220
||||||||||||||| ||||||| ||||| || || ||||| || || |||||||||
Sbjct: 106 aaggagttgaaggacttgcagaaagaccctcctgtgtcttgcagtgctggccctgttggt 165
Query: 221 gaggacatgttccattggcaagcgaccatcatggggccttcggacagcccatttgcaggt 280
|| ||| |||| ||||||||||| || |||||||| || | ||||| || | ||| |||
Sbjct: 166 gaagacctgtttcattggcaagctactatcatgggaccggcagacagtccttatgctggt 225
Query: 281 ggggtattcttggtgaacattcacttcccaccggattaccctttcaagccaccaaaggtg 340
|| |||||| | |||| ||||||||||||||| ||||| || | ||||||||||||||
Sbjct: 226 ggtgtattcctagtgaccattcacttcccaccagattatccatctaagccaccaaaggtt 285
Query: 341 tctttccgcaccaaggttttccacccgaacatcaacagcaacggcagcatttgccttgac 400
|| || || || || || |||||||| |||||||||||||| || || || || ||||||
Sbjct: 286 tcctttcgaacaaaagtgttccaccctaacatcaacagcaatgggagtatctgtcttgac 345
Query: 401 attcttaaggaacagtggagccctgctttaactatctcaaaggttctcctgtcaatctgc 460
||||| || || |||||||| |||||| | ||| | || ||||| || |||||||| |||
Sbjct: 346 attctgaaagagcagtggagtcctgctcttactgtttcgaaggtcctgctgtcaatttgc 405
Query: 461 tcactgctcacggacccaaaccctgatgatcctcttgtccctgagattgctcacatgtac 520
|| ||||| || || |||||||| ||||||||| | || ||||| ||||| |||||||||
Sbjct: 406 tctctgctgacagatccaaacccagatgatcctttggtgcctgatattgcccacatgtac 465
Query: 521 aagaccgacagggccaagtatgag 544
||||| |||| ||||||||||||
Sbjct: 466 aagactgacaaagccaagtatgag 489
>gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 178 bits (90), Expect = 5e-045
Identities = 312/386 (80%)
Strand = Plus / Plus
Query: 140 atggcgtcgaagaggatcctgaaggagttgaaggacctgcagaaggacccgcccacctcc 199
||||| ||||| ||||||| |||||| | ||||| |||||||||| || || || ||
Sbjct: 198 atggcatcgaaacggatcctcaaggagctcaaggatttgcagaaggatccaccaacatca 257
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
||||| ||||||||||| | |||||||||||| ||||||||||| || |||||||| |||
Sbjct: 258 tgcagtgcaggtcctgtggctgaggacatgtttcattggcaagcaacaatcatgggacct 317
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||| | ||| ||||| || || ||||| ||||| || || ||||||||
Sbjct: 318 gctgatagcccctatgctggtggtgtgtttttggtttcaattcattttcctccggattat 377
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| ||||||||||||||||| | || | || ||||| |||||||| ||||||||||||
Sbjct: 378 ccattcaagccaccaaaggttgcatttaggactaaggtattccacccaaacatcaacagc 437
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| || || ||||| || ||||||||||||||||| ||||||||||| | || || ||
Sbjct: 438 aatggaagtatttgtctcgacattcttaaggaacaatggagccctgcactgaccatttcc 497
Query: 440 aaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtc 499
||||| || |||||||||||||| || | ||||| || || || |||||||| |||||
Sbjct: 498 aaggtgcttttgtcaatctgctcattgttgacggatcccaatcccgatgatccgcttgtg 557
Query: 500 cctgagattgctcacatgtacaagac 525
||||| ||||| || |||||||||||
Sbjct: 558 cctgaaattgcacatatgtacaagac 583
>gb|CO511830.1|CO511830 s13dSG02E0400035_103560 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 174 bits (88), Expect = 7e-044
Identities = 295/364 (81%)
Strand = Plus / Plus
Query: 161 aaggagttgaaggacctgcagaaggacccgcccacctcctgcagcgcaggtcctgttggt 220
||||| ||||||||| |||||||||| || || | || ||||| || || ||||| | |
Sbjct: 115 aaggaattgaaggacttgcagaaggatcctcctgcttcttgcagtgctggccctgtcgct 174
Query: 221 gaggacatgttccattggcaagcgaccatcatggggccttcggacagcccatttgcaggt 280
|| || ||||||||||||||||| || || ||||| || || ||||||||||| ||
Sbjct: 175 gatgatatgttccattggcaagctacaattatgggcccaggagatagcccatttgcggga 234
Query: 281 ggggtattcttggtgaacattcacttcccaccggattaccctttcaagccaccaaaggtg 340
|| || || | ||| | ||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 235 ggtgtgtttcttgtgcaaattcacttccctccggattatcctttcaaaccacccaaggtt 294
Query: 341 tctttccgcaccaaggttttccacccgaacatcaacagcaacggcagcatttgccttgac 400
|| |||||||| |||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 295 tcattccgcacaaaggttttccaccctaatatcaacagtaacggtagcatttgccttgac 354
Query: 401 attcttaaggaacagtggagccctgctttaactatctcaaaggttctcctgtcaatctgc 460
|| || || || || ||||||||||| || || || || ||||| || ||||| || ||
Sbjct: 355 atcctgaaagagcaatggagccctgccttcacaatatccaaggtgctactgtccatttgt 414
Query: 461 tcactgctcacggacccaaaccctgatgatcctcttgtccctgagattgctcacatgtac 520
|| ||| | || || || ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 415 tctctgttgactgatcccaacccagatgatcctctggtccctgaaattgctcatatgtac 474
Query: 521 aaga 524
||||
Sbjct: 475 aaga 478
>gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 490
Score = 172 bits (87), Expect = 3e-043
Identities = 315/391 (80%)
Strand = Plus / Plus
Query: 140 atggcgtcgaagaggatcctgaaggagttgaaggacctgcagaaggacccgcccacctcc 199
||||| ||||| ||||||| |||||| | ||||| |||||||||| || || || ||
Sbjct: 100 atggcatcgaaacggatcctcaaggagctcaaggatttgcagaaggatccaccaacatca 159
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
||||| ||||||||||| | |||||||||||| ||||||||||| || |||||||| |||
Sbjct: 160 tgcagtgcaggtcctgtggctgaggacatgtttcattggcaagcaacaatcatgggacct 219
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||| | ||| ||||| || || ||||| ||||| || || ||||||||
Sbjct: 220 gctgatagcccctatgctggtggtgtgtttttggtttcaattcattttcctccggattat 279
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| ||||||||||||||||| | || | || ||||| |||||||| ||||||||||||
Sbjct: 280 ccattcaagccaccaaaggttgcatttaggactaaggtattccacccaaacatcaacagc 339
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| || || ||||| || ||||||||||||||||| ||||||||||| | || || ||
Sbjct: 340 aatggaagtatttgtctcgacattcttaaggaacaatggagccctgcactgaccatttcc 399
Query: 440 aaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtc 499
||||| || |||||||||||||| || | ||||| || || || ||||| || |||||
Sbjct: 400 aaggtgcttttgtcaatctgctcattgttgacggatcccaatcccgatgacccgcttgtg 459
Query: 500 cctgagattgctcacatgtacaagaccgaca 530
||||| ||||| || ||||||||||| ||||
Sbjct: 460 cctgaaattgcacatatgtacaagactgaca 490
>gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 418
Score = 151 bits (76), Expect = 1e-036
Identities = 262/324 (80%)
Strand = Plus / Plus
Query: 140 atggcgtcgaagaggatcctgaaggagttgaaggacctgcagaaggacccgcccacctcc 199
||||| ||||| ||||||| |||||| | ||||| |||||||||| || || || ||
Sbjct: 75 atggcatcgaaacggatcctcaaggagctcaaggatttgcagaaggatccaccaacatca 134
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
||||| ||||||||||| | |||||||||||| ||||||||||| || |||||||| |||
Sbjct: 135 tgcagtgcaggtcctgtggctgaggacatgtttcattggcaagcaacaatcatgggacct 194
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||| | ||| ||||| || || ||||| ||||| || || ||||||||
Sbjct: 195 gctgatagcccctatgctggtggtgtgtttttggtttcaattcattttcctccggattat 254
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| ||||||||||||||||| | || | || ||||| |||||||| ||||||||||||
Sbjct: 255 ccattcaagccaccaaaggttgcatttaggactaaggtattccacccaaacatcaacagc 314
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| || || ||||| || ||||||||||||||||| ||||||||||| | || || ||
Sbjct: 315 aatggaagtatttgtctcgacattcttaaggaacaatggagccctgcactgaccatttcc 374
Query: 440 aaggttctcctgtcaatctgctca 463
||||| || ||||||||||||||
Sbjct: 375 aaggtgcttttgtcaatctgctca 398
>gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 335
Score = 127 bits (64), Expect = 2e-029
Identities = 250/311 (80%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
||||| ||||||||||| | |||||||||||| ||||||||||| || |||||||| |||
Sbjct: 318 tgcagtgcaggtcctgtggctgaggacatgtttcattggcaagcaacaatcatgggacct 259
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||| | ||| ||||| || || ||||| ||||| || || ||||||||
Sbjct: 258 gctgatagcccctatgctggtggtgtgtttttggtttcaattcattttcctccggattat 199
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| ||||||||||||||||| | | | || ||||| |||||||| ||||||||||||
Sbjct: 198 ccattcaagccaccaaaggttgcatntaggactaaggtattccacccaaacatcaacagc 139
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| || || ||||| || ||||||||||||||||| ||||||||||| | || || ||
Sbjct: 138 aatggaagtatttgtctcgacattcttaaggaacaatggagccctgcactgac-atttcc 80
Query: 440 aaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtc 499
||||| || |||||||||||||| || | ||||| || || || ||||| || |||||
Sbjct: 79 aaggtgcttttgtcaatctgctcattgttgacggatcccaatcccgatgacccgcttgtg 20
Query: 500 cctgagattgc 510
||||| |||||
Sbjct: 19 cctgaaattgc 9
>gb|CO513129.1|CO513129 s13dSG23C0100002_129422 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 517
Score = 121 bits (61), Expect = 9e-028
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 470 acggacccaaaccctgatgatcctcttgtccctgagattgctcacatgtacaagaccgac 529
|||||||| ||||| |||||||| ||||| ||||| | ||| ||||||||||||||||||
Sbjct: 14 acggaccccaaccccgatgatccacttgttcctgaaactgcacacatgtacaagaccgac 73
Query: 530 agggccaagtatgagtccaccgcacgctcctggacacagaagtatgccatggg 582
|||||||||||||| |||| || ||| ||||||||||||||||||||||||
Sbjct: 74 agggccaagtatgaagccacagctcgcagctggacacagaagtatgccatggg 126
>gb|CO515876.1|CO515876 s13dSG91B0900075_421291 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 89.7 bits (45), Expect = 3e-018
Identities = 312/401 (77%)
Strand = Plus / Plus
Query: 140 atggcgtcgaagaggatcctgaaggagttgaaggacctgcagaaggacccgcccacctcc 199
||||| || ||| ||||||| ||||| | |||||||| ||||| || || || |||||
Sbjct: 93 atggcctccaagcggatcctcaaggaactcaaggaccttcagaaagatcctccaacctct 152
Query: 200 tgcagcgcaggtcctgttggtgaggacatgttccattggcaagcgaccatcatggggcct 259
|||||||| || ||||| | || |||||||| ||||||||||| || || ||||| ||
Sbjct: 153 tgcagcgctggccctgtagcagaagacatgtttcattggcaagcaactataatgggtccc 212
Query: 260 tcggacagcccatttgcaggtggggtattcttggtgaacattcacttcccaccggattac 319
| || ||||| | ||| || || || || | || | |||||| || || || |||||
Sbjct: 213 cccgatagcccttatgccggaggagtttttctagttaccattcattttcctcctgattat 272
Query: 320 cctttcaagccaccaaaggtgtctttccgcaccaaggttttccacccgaacatcaacagc 379
|| ||||||||||| ||||| | || | ||||| ||||||||||| || |||||||||
Sbjct: 273 ccattcaagccacccaaggttgcatttaggaccaaagttttccacccaaatatcaacagc 332
Query: 380 aacggcagcatttgccttgacattcttaaggaacagtggagccctgctttaactatctca 439
|| || |||||||| ||||| || | ||||| ||||||||||| ||||| || || ||
Sbjct: 333 aatggtagcatttgtcttgatatcttgaaggagcagtggagccccgctttgacaatatct 392
Query: 440 aaggttctcctgtcaatctgctcactgctcacggacccaaaccctgatgatcctcttgtc 499
||||| || | || || || || ||| | ||||| |||||||| |||||||| | ||
Sbjct: 393 aaggtgctgttatccatttgttccctgttgacggatccaaacccagatgatcccttagtg 452
Query: 500 cctgagattgctcacatgtacaagaccgacagggccaagta 540
||||| || ||||| ||||||||||| |||||| |||||||
Sbjct: 453 cctgaaatagctcatatgtacaagacagacaggtccaagta 493
>gb|AJ410088.1|AJ410088 AJ410088 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone L482, mRNA sequence
Length = 320
Score = 79.8 bits (40), Expect = 3e-015
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 479 aaccctgatgatcctcttgtccctgagattgctcacatgtacaagaccgacagggccaag 538
||||| ||||||||||| |||||||| |||||||| |||||||||| |||| || |||
Sbjct: 11 aacccagatgatcctctggtccctgaaattgctcatatgtacaagagtgacaaagctaag 70
Query: 539 tatgagtccaccgcacgctcctggacacagaagtatgccatggg 582
|||||| |||| || || || ||||| ||||| |||||||||||
Sbjct: 71 tatgaggccactgctcggtcatggacccagaaatatgccatggg 114
>gb|CO517161.1|CO517161 s13dSG33C1100086_474406 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 621
Score = 61.9 bits (31), Expect = 7e-010
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 500 cctgagattgctcacatgtacaagaccgacagggccaagtatgagtccaccgcacgctcc 559
||||| || ||||| ||||||||||| |||||| |||||||||| |||| || || |
Sbjct: 466 cctgaaatagctcatatgtacaagacagacaggtccaagtatgaaaccactgctcggagc 407
Query: 560 tggacacagaagtatgccatgggctag 586
||||| ||||||||||| |||||||||
Sbjct: 406 tggactcagaagtatgcaatgggctag 380
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1786
Number of Sequences: 7669
Number of extensions: 1786
Number of successful extensions: 520
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 19
length of query: 931
length of database: 3,745,706
effective HSP length: 16
effective length of query: 915
effective length of database: 3,623,002
effective search space: 3315046830
effective search space used: 3315046830
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)