BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441276.2.1
         (1796 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|L37606.1|ALFNDGS  Medicago sativa (clone GG16-1) NADH-dep...    34   0.33 
gb|L01660.1|ALFNADHSYN  Medicago sativa NADH-glutamate synth...    34   0.33 

>gb|L37606.1|ALFNDGS Medicago sativa (clone GG16-1) NADH-dependent glutamate synthase
            gene, complete cds
          Length = 14306

 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 963  tgaaatacttcttgacc 979
            |||||||||||||||||
Sbjct: 8058 tgaaatacttcttgacc 8042



>gb|L01660.1|ALFNADHSYN Medicago sativa NADH-glutamate synthase mRNA, comlete cds
          Length = 7174

 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 963  tgaaatacttcttgacc 979
            |||||||||||||||||
Sbjct: 2718 tgaaatacttcttgacc 2702



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3669
Number of Sequences: 7669
Number of extensions: 3669
Number of successful extensions: 993
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 7
length of query: 1796
length of database: 3,745,706
effective HSP length: 17
effective length of query: 1779
effective length of database: 3,615,333
effective search space: 6431677407
effective search space used: 6431677407
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)