BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.2
(1019 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular tr... 117 2e-026
gb|AJ888506.1|AJ888506 AJ888506 Medicago sativa subsp. x va... 103 2e-022
gb|CO514165.1|CO514165 s13dSG70A1000069_156992 Glandular tr... 36 0.047
>gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 117 bits (59), Expect = 2e-026
Identities = 271/339 (79%), Gaps = 2/339 (0%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactg 335
||||||||||| || ||||| |||||||||||||| || ||||| || |||| ||||
Sbjct: 414 ttgatgtactgagaaacccatttgaaaccatcaccataacccattttcttcacaatactg 355
Query: 336 cacatgaagacctcaagtggacggacattggagtc-gccaaggttgaccttgcccttccc 394
|||||||| ||||| | || |||||||| ||||| | ||| || ||||| ||||| ||
Sbjct: 354 cacatgaatacctccatgggtcggacatttgagtctgacaaattt-accttacccttgcc 296
Query: 395 ggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgg 454
|| ||||||||||| | ||| | || || || | || ||||| ||||||||||||||
Sbjct: 295 agtggtgaagttgctcaagcccaaatggtaacgcaattcgtcttctgaggcagcatatgg 236
Query: 455 gatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacag 514
|||||||| ||||| ||||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 235 aatatcaattttgtttccaaggacaaggaaagggacatttgccaatgattcatcagaaag 176
Query: 515 gagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccag 574
||||||||| | |||||| ||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct: 175 gagagcatccaactccttttttgactcagcaaatctttccttgtcataagcatcaaccaa 116
Query: 575 gtatactacagcatcaacctttgcgtagtaatccttcca 613
||| || || ||||| |||| || |||||||| |||||
Sbjct: 115 gtagaccactgcatctacctgggcatagtaatctttcca 77
>gb|AJ888506.1|AJ888506 AJ888506 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 742
Score = 103 bits (52), Expect = 2e-022
Identities = 288/366 (78%), Gaps = 1/366 (0%)
Strand = Plus / Minus
Query: 441 gaggcagcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaa 500
|||||||||||||| |||||||| ||||| ||||||| || || || ||||| |||||
Sbjct: 521 gaggcagcatatggaatatcaattttgtttccaaggacaaggaaagggacatttgccaat 462
Query: 501 gaatcatcagacaggagagcatcgagctcc-ttctttgattcagcaaatcgctccttatc 559
|| |||||||| ||||||||||| | |||| || ||||| |||||||||| ||||| ||
Sbjct: 461 gattcatcagaaaggagagcatccaactcctttttttgactcagcaaatctttccttgtc 402
Query: 560 atatgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcg 619
||| ||||| |||| ||| || || ||||| |||| || |||||||| ||||| ||
Sbjct: 401 ataagcatcaaccaagtagaccactgcatctacctgggcatagtaatctttccagactnt 342
Query: 620 gcgcgcgatctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgag 679
|| || ||||| || || || | || || || || ||||||||||| || || || |
Sbjct: 341 acgagcaatctgatgaccccccaaatcaaaagctttaaacttgatcttcccaatactcaa 282
Query: 680 ctcctccgacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcat 739
||| || || ||||| | ||| |||||||| ||||| || || | || ||| ||||||||
Sbjct: 281 ctcttctgatgtcggatactgagtcggctgatgctggactaatctctngtctttgagcat 222
Query: 740 gtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctcctt 799
|| |||| ||||| ||||||||||||||||| || | ||| | |||||| ||||| ||
Sbjct: 221 atgaagcaaggtggttttgccggcgttgtcgagacctaagaataagatcttagcctcttt 162
Query: 800 ctgcca 805
||||||
Sbjct: 161 ctgcca 156
>gb|CO514165.1|CO514165 s13dSG70A1000069_156992 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 359
Score = 36.2 bits (18), Expect = 0.047
Identities = 51/62 (82%)
Strand = Plus / Minus
Query: 732 ttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttg 791
|||||||| || || || ||||| || ||||| || || || ||||||||||| ||||||
Sbjct: 274 ttgagcatatgaagaagggtggtttttccggcattatcaagaccaaggaagagaatcttg 215
Query: 792 gc 793
||
Sbjct: 214 gc 213
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1838
Number of Sequences: 7669
Number of extensions: 1838
Number of successful extensions: 524
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 6
length of query: 1019
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1003
effective length of database: 3,623,002
effective search space: 3633871006
effective search space used: 3633871006
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)