BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular tr... 115 4e-026
gb|AJ888506.1|AJ888506 AJ888506 Medicago sativa subsp. x va... 98 9e-021
>gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 115 bits (58), Expect = 4e-026
Identities = 273/342 (79%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || ||||| ||||||||||| || || ||||| || |||| ||||
Sbjct: 414 ttgatgtactgagaaacccatttgaaaccatcaccataacccattttcttcacaatactg 355
Query: 360 cacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttccc 418
|||||||| ||||| | || |||||||| ||||| | ||| || ||||| ||||| ||
Sbjct: 354 cacatgaatacctccatgggtcggacatttgagtctgacaaattt-accttacccttgcc 296
Query: 419 ggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacgg 478
|| ||||||||||| | ||| | || || |||| || ||||| ||||||||||| ||
Sbjct: 295 agtggtgaagttgctcaagcccaaatggtaacgcaattcgtcttctgaggcagcatatgg 236
Query: 479 gatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacag 538
|||||||| ||||| ||||||| || || || ||||||||||| || ||||| || ||
Sbjct: 235 aatatcaattttgtttccaaggacaaggaaagggacatttgccaatgattcatcagaaag 176
Query: 539 gagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccag 598
|||||| |||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct: 175 gagagcatccaactccttttttgactcagcaaatctttccttgtcataagcatcaaccaa 116
Query: 599 gtatactacagcatcaacctttgcgtagtaatccttccagac 640
||| || || ||||| |||| || |||||||| ||||||||
Sbjct: 115 gtagaccactgcatctacctgggcatagtaatctttccagac 74
>gb|AJ888506.1|AJ888506 AJ888506 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 742
Score = 97.6 bits (49), Expect = 9e-021
Identities = 146/177 (82%), Gaps = 1/177 (0%)
Strand = Plus / Minus
Query: 465 gaggcagcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaag 524
||||||||||| || |||||||| ||||| ||||||| || || || |||||||||||
Sbjct: 521 gaggcagcatatggaatatcaattttgtttccaaggacaaggaaagggacatttgccaat 462
Query: 525 gaatcatctgacaggagagcgtccagctcc-ttttttgattcagcaaatcgctccttatc 583
|| ||||| || |||||||| |||| |||| |||||||| |||||||||| ||||| ||
Sbjct: 461 gattcatcagaaaggagagcatccaactcctttttttgactcagcaaatctttccttgtc 402
Query: 584 atacgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccagac 640
||| ||||| |||| ||| || || ||||| |||| || |||||||| ||||||||
Sbjct: 401 ataagcatcaaccaagtagaccactgcatctacctgggcatagtaatctttccagac 345
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1198
Number of Sequences: 7669
Number of extensions: 1198
Number of successful extensions: 294
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 4
length of query: 643
length of database: 3,745,706
effective HSP length: 16
effective length of query: 627
effective length of database: 3,623,002
effective search space: 2271622254
effective search space used: 2271622254
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)