BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437779.2.1
(3727 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 64 8e-010
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 63.9 bits (32), Expect = 8e-010
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 620 acagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggcaaat 679
||||||||| | ||||||| |||||| | ||||| || | ||| ||||| | ||||||
Sbjct: 407 acagtgaagtttgtgtcgacaccagctaaaaccttgagcaaaccttggaaaagggcaaaa 348
Query: 680 aaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatcaatg 739
||||| | ||| ||| ||||| ||||| ||||| || ||||||||||| ||||| ||
Sbjct: 347 aaatgtgatgaagcacctccaatcacccaaaactgttcattcctccaccaatcatctatt 288
Query: 740 ccaacaccactccacctcatctcaaggatacc 771
|||||||||| ||| |||||||||||||||
Sbjct: 287 ccaacaccaccccattgcatctcaaggatacc 256
Score = 36.2 bits (18), Expect = 0.17
Identities = 48/58 (82%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagccc 1022
||||| ||||| || |||||||| ||||||||| || |||| |||||||||||||
Sbjct: 62 tagccgtaccaaattggacaatgtttgctgaaaaagatctcaacagaaccaagagccc 5
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7786
Number of Sequences: 7669
Number of extensions: 7786
Number of successful extensions: 2146
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2143
Number of HSP's gapped (non-prelim): 3
length of query: 3727
length of database: 3,745,706
effective HSP length: 17
effective length of query: 3710
effective length of database: 3,615,333
effective search space: 13412885430
effective search space used: 13412885430
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)